Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.92□□□□□ -0.18
CDH3P22223 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 BEND3P3-201ENST00000611030 2440 ntBASIC13.92□□□□□ -0.18
CDH3P22223 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CDH3P22223 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.92□□□□□ -0.18
CDH3P22223 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 AL031595.1-201ENST00000623969 4709 ntBASIC13.92□□□□□ -0.18
CDH3P22223 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.92□□□□□ -0.18
CDH3P22223 AC007274.2-201ENST00000421675 662 ntBASIC13.92□□□□□ -0.18
CDH3P22223 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.92□□□□□ -0.18
CDH3P22223 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.92□□□□□ -0.18
CDH3P22223 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 MIR3188-201ENST00000583494 85 ntBASIC13.92□□□□□ -0.18
CDH3P22223 AC020922.3-201ENST00000595064 547 ntBASIC13.92□□□□□ -0.18
CDH3P22223 MIR6074-201ENST00000612054 107 ntBASIC13.92□□□□□ -0.18
CDH3P22223 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 AL591471.1-201ENST00000621855 229 ntBASIC13.92□□□□□ -0.18
CDH3P22223 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.92□□□□□ -0.18
CDH3P22223 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CDH3P22223 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH3P22223 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH3P22223 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CDH3P22223 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CDH3P22223 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
CDH3P22223 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.91□□□□□ -0.18
CDH3P22223 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CDH3P22223 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 AC073150.1-201ENST00000450406 1084 ntBASIC13.91□□□□□ -0.18
CDH3P22223 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 IMP3P2-201ENST00000489760 475 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms