Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 NBR1-205ENST00000589872 3097 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 TIGAR-204ENST00000635110 3633 ntTSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 MRPL37P1-201ENST00000592451 1337 ntBASIC10.94□□□□□ -0.66
CXCL1P09341 DNAJB12-204ENST00000461919 2369 ntTSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 AIF1L-201ENST00000247291 3364 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 LINC01164-201ENST00000341866 3384 ntTSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 LSM5-207ENST00000410044 687 ntTSL 3 BASIC10.94□□□□□ -0.66
CXCL1P09341 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC10.94□□□□□ -0.66
CXCL1P09341 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC10.94□□□□□ -0.66
CXCL1P09341 RHOA-206ENST00000454011 889 ntTSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC10.94□□□□□ -0.66
CXCL1P09341 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC10.94□□□□□ -0.66
CXCL1P09341 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC10.94□□□□□ -0.66
CXCL1P09341 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 TLE3-208ENST00000557907 2295 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 AC080013.1-204ENST00000607426 2185 ntBASIC10.94□□□□□ -0.66
CXCL1P09341 SON-203ENST00000381679 7860 ntTSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 SLC4A9-201ENST00000432095 3086 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 IL17REL-201ENST00000341280 3500 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 DNMT3A-202ENST00000321117 4279 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 SLC45A3-201ENST00000367145 3341 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 ELMOD3-203ENST00000409013 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 AC245100.6-201ENST00000427169 1918 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 HAS3-202ENST00000306560 4220 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 C22orf39-202ENST00000399562 3350 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 HIF3A-204ENST00000300862 2551 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 FAM156B-203ENST00000593751 2942 ntAPPRIS P2 TSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 FAM156A-201ENST00000596733 2942 ntAPPRIS P2 TSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 FP325330.2-201ENST00000624219 5630 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
CXCL1P09341 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 USP17L6P-201ENST00000382470 1197 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 COA5-202ENST00000409997 557 ntTSL 4 BASIC10.93□□□□□ -0.66
CXCL1P09341 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC10.93□□□□□ -0.66
CXCL1P09341 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 PHKB-208ENST00000566044 3829 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 AC036164.1-201ENST00000570544 333 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 SSH2-210ENST00000582084 560 ntTSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 HOTTIP_1.1-201ENST00000620415 57 ntBASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms