Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ALK-205ENST00000618119 4646 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 SGK1-220ENST00000524929 2594 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 PARN-203ENST00000437198 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 ACTBP8-201ENST00000403258 1108 ntBASIC11.81□□□□□ -0.52
HOXA1P49639 AC003958.1-201ENST00000435883 421 ntBASIC11.81□□□□□ -0.52
HOXA1P49639 GNAQP1-201ENST00000444815 1067 ntBASIC11.81□□□□□ -0.52
HOXA1P49639 URGCP-206ENST00000446958 365 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.81□□□□□ -0.52
HOXA1P49639 FADS2-205ENST00000517839 469 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA1P49639 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC11.81□□□□□ -0.52
HOXA1P49639 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 SYDE1-203ENST00000600252 3832 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 AC133539.2-201ENST00000604757 467 ntBASIC11.81□□□□□ -0.52
HOXA1P49639 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 AC093512.1-201ENST00000617969 520 ntBASIC11.81□□□□□ -0.52
HOXA1P49639 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA1P49639 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 TSKU-203ENST00000527881 3554 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 AC111170.3-201ENST00000624282 2464 ntBASIC11.81□□□□□ -0.52
HOXA1P49639 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA1P49639 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.81□□□□□ -0.52
HOXA1P49639 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
HOXA1P49639 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA1P49639 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA1P49639 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 SPCS2-209ENST00000610881 2711 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 STRA6-204ENST00000423167 2776 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 FAM225A-202ENST00000453010 5625 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 ST3GAL6-228ENST00000613264 3399 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 AC010336.1-201ENST00000539278 4739 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
HOXA1P49639 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
HOXA1P49639 AC136604.1-202ENST00000425471 771 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.8□□□□□ -0.52
HOXA1P49639 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 GCOM2-201ENST00000509133 1104 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.8□□□□□ -0.52
HOXA1P49639 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.8□□□□□ -0.52
HOXA1P49639 AC138761.1-201ENST00000584393 385 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 AC099568.2-201ENST00000609194 695 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 AC106028.4-201ENST00000614509 607 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms