Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.98□□□□□ -0.17
COL6A3P12111 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A3P12111 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 C19orf38-201ENST00000397820 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 PPM1N-204ENST00000401593 548 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 CLDN16-202ENST00000456423 430 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 DERL1-204ENST00000519018 575 ntTSL 4 BASIC13.98□□□□□ -0.17
COL6A3P12111 ELOC-208ENST00000523815 719 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
COL6A3P12111 AP002414.5-201ENST00000591853 258 ntTSL 4 BASIC13.98□□□□□ -0.17
COL6A3P12111 EIF3K-213ENST00000593149 760 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 C17orf75-202ENST00000577809 1642 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 COX4I2-201ENST00000376075 693 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CGREF1-209ENST00000640154 336 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 HAMP-201ENST00000222304 558 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 TEPP-201ENST00000290871 1079 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 GSTM1-204ENST00000369823 852 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A3P12111 ZFR2-203ENST00000439086 870 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 TEPP-202ENST00000441824 998 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CHORDC2P-201ENST00000557601 1090 ntBASIC13.97□□□□□ -0.17
COL6A3P12111 AC008686.1-201ENST00000586894 565 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 AP000553.1-201ENST00000610143 430 ntBASIC13.97□□□□□ -0.17
COL6A3P12111 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL6A3P12111 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL6A3P12111 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 C9orf147-203ENST00000460965 446 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A3P12111 AC008676.2-201ENST00000519499 741 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A3P12111 OR7E14P-201ENST00000526721 1000 ntBASIC13.97□□□□□ -0.17
COL6A3P12111 AC069234.1-201ENST00000542620 583 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A3P12111 AC087463.4-201ENST00000561964 448 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 AC010326.4-201ENST00000604665 891 ntBASIC13.97□□□□□ -0.17
COL6A3P12111 ZNF268-219ENST00000611984 583 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 PCGF2-205ENST00000618506 1196 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 AC244517.2-204ENST00000624802 415 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A3P12111 AL513478.3-201ENST00000641038 1095 ntBASIC13.97□□□□□ -0.17
COL6A3P12111 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A3P12111 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 IKZF3-211ENST00000394189 1552 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A3P12111 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
COL6A3P12111 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC13.96□□□□□ -0.17
COL6A3P12111 AL589674.1-201ENST00000454401 222 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A3P12111 AC106774.3-201ENST00000505444 169 ntBASIC13.96□□□□□ -0.17
COL6A3P12111 AC015563.2-201ENST00000579580 772 ntTSL 3 BASIC13.96□□□□□ -0.17
COL6A3P12111 AC010601.2-201ENST00000623060 774 ntBASIC13.96□□□□□ -0.17
COL6A3P12111 SPDL1-216ENST00000629457 340 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A3P12111 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 AL354702.1-201ENST00000442006 1960 ntBASIC13.96□□□□□ -0.17
COL6A3P12111 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A3P12111 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.96□□□□□ -0.17
COL6A3P12111 DAND5-201ENST00000317060 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 RCL1-203ENST00000381732 804 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A3P12111 CDC23-201ENST00000394884 1079 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 RBM14-203ENST00000409372 876 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A3P12111 C2orf70-202ENST00000409392 764 ntTSL 3 BASIC13.96□□□□□ -0.17
COL6A3P12111 FAM230B-204ENST00000421576 598 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A3P12111 RN7SL553P-201ENST00000482215 298 ntBASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms