Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC15.65■□□□□ 0.1
TPM1P09493 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.65■□□□□ 0.1
TPM1P09493 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC15.65■□□□□ 0.1
TPM1P09493 AL590824.1-201ENST00000403828 1349 ntBASIC15.65■□□□□ 0.1
TPM1P09493 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC15.65■□□□□ 0.1
TPM1P09493 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
TPM1P09493 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TPM1P09493 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC15.65■□□□□ 0.1
TPM1P09493 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.65■□□□□ 0.1
TPM1P09493 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TPM1P09493 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
TPM1P09493 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC15.64■□□□□ 0.1
TPM1P09493 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
TPM1P09493 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
TPM1P09493 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 AL355102.3-201ENST00000554299 1678 ntBASIC15.64■□□□□ 0.09
TPM1P09493 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC15.64■□□□□ 0.09
TPM1P09493 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
TPM1P09493 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.64■□□□□ 0.09
TPM1P09493 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.64■□□□□ 0.09
TPM1P09493 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.64■□□□□ 0.09
TPM1P09493 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC15.64■□□□□ 0.09
TPM1P09493 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.64■□□□□ 0.09
TPM1P09493 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.64■□□□□ 0.09
TPM1P09493 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM1P09493 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 LAP3P2-201ENST00000454686 1454 ntBASIC15.64■□□□□ 0.09
TPM1P09493 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 DDC-214ENST00000622873 1839 ntTSL 3 BASIC15.64■□□□□ 0.09
TPM1P09493 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM1P09493 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM1P09493 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM1P09493 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 C2orf27AP3-201ENST00000434123 579 ntBASIC15.63■□□□□ 0.09
TPM1P09493 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM1P09493 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 RNA5SP486-201ENST00000515961 83 ntBASIC15.63■□□□□ 0.09
TPM1P09493 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TPM1P09493 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.63■□□□□ 0.09
TPM1P09493 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.63■□□□□ 0.09
TPM1P09493 AC140912.1-201ENST00000577171 1054 ntBASIC15.63■□□□□ 0.09
TPM1P09493 MIR4683-201ENST00000579659 81 ntBASIC15.63■□□□□ 0.09
TPM1P09493 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 AL354718.3-201ENST00000616414 581 ntBASIC15.63■□□□□ 0.09
TPM1P09493 CR382287.1-201ENST00000623954 586 ntBASIC15.63■□□□□ 0.09
TPM1P09493 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM1P09493 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms