Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 RN7SL455P-201ENST00000580629 282 ntBASIC12.81□□□□□ -0.36
ATG4DQ86TL0 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 AP001505.2-201ENST00000616815 443 ntBASIC12.81□□□□□ -0.36
ATG4DQ86TL0 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 TUBBP5-203ENST00000508529 1334 ntBASIC12.81□□□□□ -0.36
ATG4DQ86TL0 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.81□□□□□ -0.36
ATG4DQ86TL0 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SNORA50C-201ENST00000408535 133 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 DUX4L50-201ENST00000455245 715 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 KRT8P1-201ENST00000557533 1207 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AC105129.2-201ENST00000559536 390 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 RN7SL774P-201ENST00000577467 290 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AC097724.1-201ENST00000609581 426 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AC091544.8-201ENST00000619490 361 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SNORA50.1-201ENST00000628590 135 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AL805961.1-203ENST00000641078 1258 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 NAP1L6-202ENST00000641404 1222 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 AC008132.1-202ENST00000342005 1389 ntBASIC12.8□□□□□ -0.36
ATG4DQ86TL0 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.8□□□□□ -0.36
ATG4DQ86TL0 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
ATG4DQ86TL0 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms