Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC12.64□□□□□ -0.39
H3F3AP84243 AC026320.2-201ENST00000434379 478 ntBASIC12.64□□□□□ -0.39
H3F3AP84243 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC12.64□□□□□ -0.39
H3F3AP84243 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC12.64□□□□□ -0.39
H3F3AP84243 AC008723.1-201ENST00000506922 207 ntBASIC12.64□□□□□ -0.39
H3F3AP84243 ALG1L13P-202ENST00000519320 584 ntBASIC12.64□□□□□ -0.39
H3F3AP84243 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.64□□□□□ -0.39
H3F3AP84243 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.64□□□□□ -0.39
H3F3AP84243 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
H3F3AP84243 NDUFB10P1-201ENST00000567319 521 ntBASIC12.64□□□□□ -0.39
H3F3AP84243 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC12.64□□□□□ -0.39
H3F3AP84243 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
H3F3AP84243 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 AL109837.1-201ENST00000603272 613 ntBASIC12.64□□□□□ -0.39
H3F3AP84243 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC12.64□□□□□ -0.39
H3F3AP84243 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC12.64□□□□□ -0.39
H3F3AP84243 AL353770.1-201ENST00000614915 403 ntBASIC12.64□□□□□ -0.39
H3F3AP84243 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.64□□□□□ -0.39
H3F3AP84243 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.64□□□□□ -0.39
H3F3AP84243 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.64□□□□□ -0.39
H3F3AP84243 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
H3F3AP84243 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 KRT18P9-201ENST00000604826 1300 ntBASIC12.63□□□□□ -0.39
H3F3AP84243 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC12.63□□□□□ -0.39
H3F3AP84243 PPP1R2P4-201ENST00000424051 595 ntBASIC12.63□□□□□ -0.39
H3F3AP84243 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.63□□□□□ -0.39
H3F3AP84243 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC12.63□□□□□ -0.39
H3F3AP84243 NUP210P1-202ENST00000504322 710 ntBASIC12.63□□□□□ -0.39
H3F3AP84243 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC12.63□□□□□ -0.39
H3F3AP84243 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC12.63□□□□□ -0.39
H3F3AP84243 NAT9-220ENST00000582870 896 ntTSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 AC079336.7-201ENST00000623428 1078 ntBASIC12.63□□□□□ -0.39
H3F3AP84243 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.63□□□□□ -0.39
H3F3AP84243 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
H3F3AP84243 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms