Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 AL008721.1-201ENST00000609964 604 ntBASIC12.69□□□□□ -0.38
CLRN1P58418 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 AC015909.5-201ENST00000624336 2266 ntBASIC12.69□□□□□ -0.38
CLRN1P58418 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CLRN1P58418 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CLRN1P58418 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CLRN1P58418 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.68□□□□□ -0.38
CLRN1P58418 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 LINC00115-201ENST00000473798 1317 ntBASIC12.68□□□□□ -0.38
CLRN1P58418 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 AC072061.1-201ENST00000569710 2234 ntBASIC12.68□□□□□ -0.38
CLRN1P58418 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 AC061965.1-201ENST00000560524 1465 ntBASIC12.68□□□□□ -0.38
CLRN1P58418 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC12.68□□□□□ -0.38
CLRN1P58418 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC12.68□□□□□ -0.38
CLRN1P58418 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC12.68□□□□□ -0.38
CLRN1P58418 SNORD3B-2-202ENST00000571722 791 ntBASIC12.68□□□□□ -0.38
CLRN1P58418 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.68□□□□□ -0.38
CLRN1P58418 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC12.68□□□□□ -0.38
CLRN1P58418 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
CLRN1P58418 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC12.68□□□□□ -0.38
CLRN1P58418 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
CLRN1P58418 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC12.68□□□□□ -0.38
CLRN1P58418 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.68□□□□□ -0.38
CLRN1P58418 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CLRN1P58418 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CLRN1P58418 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 DPM3-202ENST00000368399 517 ntBASIC12.67□□□□□ -0.38
CLRN1P58418 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC009779.1-201ENST00000551138 283 ntBASIC12.67□□□□□ -0.38
CLRN1P58418 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 RN7SL219P-201ENST00000582872 296 ntBASIC12.67□□□□□ -0.38
CLRN1P58418 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 NKG7-204ENST00000595217 816 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 AL132994.2-201ENST00000603120 687 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms