Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
COL5A3P25940 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.02■□□□□ 0.32
COL5A3P25940 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC17.02■□□□□ 0.32
COL5A3P25940 ACTG1P23-201ENST00000437653 1074 ntBASIC17.02■□□□□ 0.32
COL5A3P25940 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC17.02■□□□□ 0.32
COL5A3P25940 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL5A3P25940 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC17.02■□□□□ 0.32
COL5A3P25940 AL109954.3-201ENST00000615088 558 ntBASIC17.02■□□□□ 0.32
COL5A3P25940 AL450487.2-201ENST00000615934 407 ntBASIC17.02■□□□□ 0.32
COL5A3P25940 AC134878.2-201ENST00000620700 1265 ntBASIC17.02■□□□□ 0.32
COL5A3P25940 AC099795.2-201ENST00000639582 440 ntBASIC17.02■□□□□ 0.32
COL5A3P25940 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
COL5A3P25940 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
COL5A3P25940 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.02■□□□□ 0.32
COL5A3P25940 AC124319.4-201ENST00000622931 2161 ntBASIC17.02■□□□□ 0.32
COL5A3P25940 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC17.02■□□□□ 0.31
COL5A3P25940 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.02■□□□□ 0.31
COL5A3P25940 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
COL5A3P25940 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A3P25940 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.02■□□□□ 0.31
COL5A3P25940 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.02■□□□□ 0.31
COL5A3P25940 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
COL5A3P25940 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A3P25940 GAPDHP29-201ENST00000429913 985 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 HMGA1P2-201ENST00000430198 324 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC17.01■□□□□ 0.31
COL5A3P25940 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 RN7SL76P-201ENST00000482435 289 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 HNRNPA1P55-201ENST00000505935 955 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 DERL1-204ENST00000519018 575 ntTSL 4 BASIC17.01■□□□□ 0.31
COL5A3P25940 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC17.01■□□□□ 0.31
COL5A3P25940 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC17.01■□□□□ 0.31
COL5A3P25940 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC17.01■□□□□ 0.31
COL5A3P25940 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A3P25940 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 GLT6D1-201ENST00000371763 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 GLT6D1-202ENST00000613244 1523 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC17.01■□□□□ 0.31
COL5A3P25940 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL5A3P25940 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A3P25940 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 RPSAP61-201ENST00000412542 878 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 DMKN-244ENST00000480502 820 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
COL5A3P25940 RN7SL638P-201ENST00000494527 290 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 PRDM2-213ENST00000503842 705 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A3P25940 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A3P25940 AL033381.2-201ENST00000603854 732 ntBASIC17.01■□□□□ 0.31
COL5A3P25940 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A3P25940 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC17.01■□□□□ 0.31
COL5A3P25940 CD9-212ENST00000610354 1315 ntTSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.01■□□□□ 0.31
COL5A3P25940 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms