Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
APOEP02649 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.87□□□□□ -0.03
APOEP02649 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
APOEP02649 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.87□□□□□ -0.03
APOEP02649 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
APOEP02649 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.86□□□□□ -0.03
APOEP02649 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
APOEP02649 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 AL031595.1-201ENST00000623969 4709 ntBASIC14.86□□□□□ -0.03
APOEP02649 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
APOEP02649 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.86□□□□□ -0.03
APOEP02649 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 AC023794.5-201ENST00000564380 2157 ntBASIC14.86□□□□□ -0.03
APOEP02649 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 ELK2AP-201ENST00000392510 1007 ntBASIC14.86□□□□□ -0.03
APOEP02649 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.86□□□□□ -0.03
APOEP02649 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.86□□□□□ -0.03
APOEP02649 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.86□□□□□ -0.03
APOEP02649 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.86□□□□□ -0.03
APOEP02649 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
APOEP02649 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
APOEP02649 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.86□□□□□ -0.03
APOEP02649 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
APOEP02649 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.85□□□□□ -0.03
APOEP02649 PDIA3P2-201ENST00000428073 158 ntBASIC14.85□□□□□ -0.03
APOEP02649 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.85□□□□□ -0.03
APOEP02649 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.85□□□□□ -0.03
APOEP02649 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.85□□□□□ -0.03
APOEP02649 AC020922.3-201ENST00000595064 547 ntBASIC14.85□□□□□ -0.03
APOEP02649 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 LINC01783-202ENST00000614408 828 ntBASIC14.85□□□□□ -0.03
APOEP02649 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.85□□□□□ -0.03
APOEP02649 MIR6769A-201ENST00000617340 73 ntBASIC14.85□□□□□ -0.03
APOEP02649 BX284668.2-205ENST00000619677 828 ntBASIC14.85□□□□□ -0.03
APOEP02649 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
APOEP02649 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.85□□□□□ -0.03
APOEP02649 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
APOEP02649 DMBT1P1-203ENST00000636837 4628 ntBASIC14.85□□□□□ -0.03
APOEP02649 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
APOEP02649 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
APOEP02649 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
APOEP02649 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms