Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 AC136469.2-201ENST00000623944 1028 ntBASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 AL136967.2-201ENST00000623968 743 ntBASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CLCF1Q9UBD9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCF1Q9UBD9 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 MIR935-201ENST00000401179 91 ntBASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCF1Q9UBD9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 AC091305.1-201ENST00000479476 895 ntBASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 pRNA.6-201ENST00000610482 90 ntBASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 pRNA.5-201ENST00000612139 90 ntBASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 pRNA.11-201ENST00000618423 90 ntBASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 pRNA.13-201ENST00000619112 90 ntBASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCF1Q9UBD9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLCF1Q9UBD9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLCF1Q9UBD9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 AC004812.2-201ENST00000611079 2094 ntBASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCF1Q9UBD9 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
CLCF1Q9UBD9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 ZNRF2P3-201ENST00000424200 374 ntBASIC20■□□□□ 0.79
CLCF1Q9UBD9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 AC027682.1-201ENST00000562846 899 ntBASIC20■□□□□ 0.79
CLCF1Q9UBD9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20■□□□□ 0.79
CLCF1Q9UBD9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20■□□□□ 0.79
CLCF1Q9UBD9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLCF1Q9UBD9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.99■□□□□ 0.79
CLCF1Q9UBD9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
CLCF1Q9UBD9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLCF1Q9UBD9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLCF1Q9UBD9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.99■□□□□ 0.79
CLCF1Q9UBD9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLCF1Q9UBD9 FP325331.1-202ENST00000623531 1380 ntBASIC19.98■□□□□ 0.79
CLCF1Q9UBD9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.98■□□□□ 0.79
CLCF1Q9UBD9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.98■□□□□ 0.79
CLCF1Q9UBD9 AC105265.2-201ENST00000467189 838 ntBASIC19.98■□□□□ 0.79
CLCF1Q9UBD9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CLCF1Q9UBD9 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms