Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VCX3AQ9NNX9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VCX3AQ9NNX9 ANOS2P-203ENST00000472227 1816 ntBASIC20.98■□□□□ 0.95
VCX3AQ9NNX9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VCX3AQ9NNX9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCX3AQ9NNX9 AL391422.3-201ENST00000603791 2761 ntBASIC20.97■□□□□ 0.95
VCX3AQ9NNX9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCX3AQ9NNX9 AC242852.2-201ENST00000615738 1807 ntBASIC20.97■□□□□ 0.95
VCX3AQ9NNX9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
VCX3AQ9NNX9 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCX3AQ9NNX9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCX3AQ9NNX9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VCX3AQ9NNX9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCX3AQ9NNX9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.94■□□□□ 0.94
VCX3AQ9NNX9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCX3AQ9NNX9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 AC092068.2-201ENST00000590491 1708 ntBASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 AF106564.1-201ENST00000607058 2553 ntBASIC20.92■□□□□ 0.94
VCX3AQ9NNX9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
VCX3AQ9NNX9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 AC007952.6-201ENST00000573168 2673 ntBASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 AC003957.1-201ENST00000625108 2673 ntBASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCX3AQ9NNX9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCX3AQ9NNX9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCX3AQ9NNX9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.89■□□□□ 0.94
VCX3AQ9NNX9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCX3AQ9NNX9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms