Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.54■■□□□ 1.04
BRF2Q9HAW0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.54■■□□□ 1.04
BRF2Q9HAW0 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
BRF2Q9HAW0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRF2Q9HAW0 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
BRF2Q9HAW0 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
BRF2Q9HAW0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF2Q9HAW0 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF2Q9HAW0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF2Q9HAW0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRF2Q9HAW0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 MIR4787-201ENST00000607364 84 ntBASIC21.5■■□□□ 1.03
BRF2Q9HAW0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.5■■□□□ 1.03
BRF2Q9HAW0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 AC144652.1-201ENST00000609974 1624 ntBASIC21.49■■□□□ 1.03
BRF2Q9HAW0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRF2Q9HAW0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 AC009299.2-201ENST00000482477 511 ntBASIC21.48■■□□□ 1.03
BRF2Q9HAW0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 AL353803.4-201ENST00000565882 1934 ntBASIC21.48■■□□□ 1.03
BRF2Q9HAW0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
BRF2Q9HAW0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 AC239859.2-201ENST00000444165 318 ntBASIC21.47■■□□□ 1.03
BRF2Q9HAW0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.47■■□□□ 1.03
BRF2Q9HAW0 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRF2Q9HAW0 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRF2Q9HAW0 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.46■■□□□ 1.03
BRF2Q9HAW0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.46■■□□□ 1.03
BRF2Q9HAW0 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms