Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 ANOS2P-203ENST00000472227 1816 ntBASIC22.47■■□□□ 1.19
LYSMD1Q96S90 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.47■■□□□ 1.19
LYSMD1Q96S90 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
LYSMD1Q96S90 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 AC092171.4-201ENST00000609130 632 ntBASIC22.45■■□□□ 1.18
LYSMD1Q96S90 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
LYSMD1Q96S90 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 DUX4L4-201ENST00000566884 1269 ntBASIC22.44■■□□□ 1.18
LYSMD1Q96S90 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.44■■□□□ 1.18
LYSMD1Q96S90 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
LYSMD1Q96S90 LINC01529-204ENST00000636474 1715 ntBASIC22.43■■□□□ 1.18
LYSMD1Q96S90 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
LYSMD1Q96S90 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
LYSMD1Q96S90 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LYSMD1Q96S90 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
LYSMD1Q96S90 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.42■■□□□ 1.18
LYSMD1Q96S90 AC099791.2-201ENST00000605725 427 ntBASIC22.42■■□□□ 1.18
LYSMD1Q96S90 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
LYSMD1Q96S90 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LYSMD1Q96S90 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LYSMD1Q96S90 DUX4L19-201ENST00000557448 1267 ntBASIC22.4■■□□□ 1.18
LYSMD1Q96S90 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
LYSMD1Q96S90 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
LYSMD1Q96S90 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
LYSMD1Q96S90 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.39■■□□□ 1.17
LYSMD1Q96S90 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.17
LYSMD1Q96S90 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LYSMD1Q96S90 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.39■■□□□ 1.17
LYSMD1Q96S90 AC009086.3-201ENST00000623486 1008 ntBASIC22.39■■□□□ 1.17
LYSMD1Q96S90 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.39■■□□□ 1.17
LYSMD1Q96S90 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LYSMD1Q96S90 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.38■■□□□ 1.17
LYSMD1Q96S90 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms