Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RNF139Q8WU17 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RNF139Q8WU17 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RNF139Q8WU17 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.6■■□□□ 1.37
RNF139Q8WU17 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.6■■□□□ 1.37
RNF139Q8WU17 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RNF139Q8WU17 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
RNF139Q8WU17 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
RNF139Q8WU17 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.59■■□□□ 1.37
RNF139Q8WU17 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
RNF139Q8WU17 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RNF139Q8WU17 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.59■■□□□ 1.37
RNF139Q8WU17 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RNF139Q8WU17 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.58■■□□□ 1.37
RNF139Q8WU17 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RNF139Q8WU17 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RNF139Q8WU17 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.58■■□□□ 1.37
RNF139Q8WU17 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.58■■□□□ 1.37
RNF139Q8WU17 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.57■■□□□ 1.36
RNF139Q8WU17 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
RNF139Q8WU17 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RNF139Q8WU17 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RNF139Q8WU17 C17orf82-201ENST00000623772 1530 ntBASIC23.56■■□□□ 1.36
RNF139Q8WU17 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.56■■□□□ 1.36
RNF139Q8WU17 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.56■■□□□ 1.36
RNF139Q8WU17 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.56■■□□□ 1.36
RNF139Q8WU17 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RNF139Q8WU17 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RNF139Q8WU17 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.56■■□□□ 1.36
RNF139Q8WU17 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
RNF139Q8WU17 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RNF139Q8WU17 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RNF139Q8WU17 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
RNF139Q8WU17 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RNF139Q8WU17 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RNF139Q8WU17 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RNF139Q8WU17 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.54■■□□□ 1.36
RNF139Q8WU17 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
RNF139Q8WU17 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
RNF139Q8WU17 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.54■■□□□ 1.36
RNF139Q8WU17 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RNF139Q8WU17 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
RNF139Q8WU17 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RNF139Q8WU17 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.53■■□□□ 1.36
RNF139Q8WU17 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.53■■□□□ 1.36
RNF139Q8WU17 AC092171.4-201ENST00000609130 632 ntBASIC23.53■■□□□ 1.36
RNF139Q8WU17 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
RNF139Q8WU17 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
RNF139Q8WU17 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
RNF139Q8WU17 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RNF139Q8WU17 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF139Q8WU17 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF139Q8WU17 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF139Q8WU17 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF139Q8WU17 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF139Q8WU17 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF139Q8WU17 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 AC099791.2-201ENST00000605725 427 ntBASIC23.51■■□□□ 1.35
RNF139Q8WU17 AC241377.3-202ENST00000626088 1088 ntBASIC23.51■■□□□ 1.35
RNF139Q8WU17 AC241585.3-202ENST00000628937 1088 ntBASIC23.51■■□□□ 1.35
RNF139Q8WU17 AC245100.8-202ENST00000629247 1058 ntBASIC23.51■■□□□ 1.35
RNF139Q8WU17 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF139Q8WU17 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
RNF139Q8WU17 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RNF139Q8WU17 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RNF139Q8WU17 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
RNF139Q8WU17 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RNF139Q8WU17 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms