Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.066e-9■■■■□ 22.3
LSM11P83369 TMEM55B-207ENST00000557041 3453 ntTSL 214.54□□□□□ -0.083e-6■■■■□ 22.3
LSM11P83369 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.11e-11■■■■□ 22.3
LSM11P83369 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.113e-6■■■■□ 22.3
LSM11P83369 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.116e-9■■■■□ 22.3
LSM11P83369 SH3PXD2A-204ENST00000420222 3251 ntTSL 214.26□□□□□ -0.133e-6■■■■□ 22.3
LSM11P83369 POLE-221ENST00000544870 659 ntTSL 314.16□□□□□ -0.143e-6■■■■□ 22.3
LSM11P83369 TMEM55B-203ENST00000553460 811 ntTSL 514.11□□□□□ -0.153e-6■■■■□ 22.3
LSM11P83369 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.77□□□□□ -0.213e-6■■■■□ 22.3
LSM11P83369 MCM5-208ENST00000465557 587 ntTSL 413.6□□□□□ -0.233e-6■■■■□ 22.3
LSM11P83369 FAM95C-201ENST00000625242 2665 ntTSL 513.55□□□□□ -0.243e-6■■■■□ 22.3
LSM11P83369 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.49□□□□□ -0.253e-6■■■■□ 22.3
LSM11P83369 FAM95C-203ENST00000637288 1965 ntAPPRIS ALT2 TSL 513.2□□□□□ -0.33e-6■■■■□ 22.3
LSM11P83369 RNF123-208ENST00000469978 889 ntTSL 313.11□□□□□ -0.313e-6■■■■□ 22.3
LSM11P83369 RNF123-205ENST00000444689 442 ntTSL 312.96□□□□□ -0.333e-6■■■■□ 22.3
LSM11P83369 MCM5-210ENST00000493569 468 ntTSL 312.42□□□□□ -0.423e-6■■■■□ 22.3
LSM11P83369 SNORD3B-1-201ENST00000577988 758 ntBASIC12.22□□□□□ -0.453e-6■■■■□ 22.3
LSM11P83369 MCM5-207ENST00000464908 554 ntTSL 412.16□□□□□ -0.463e-6■■■■□ 22.3
LSM11P83369 FAM95C-205ENST00000637556 2421 ntAPPRIS P5 TSL 2 BASIC12.16□□□□□ -0.463e-6■■■■□ 22.3
LSM11P83369 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.543e-6■■■■□ 22.3
LSM11P83369 AC022400.6-202ENST00000603706 871 ntAPPRIS ALT2 TSL 311.5□□□□□ -0.573e-6■■■■□ 22.3
LSM11P83369 SH3PXD2A-201ENST00000315994 5504 ntTSL 1 (best)11.36□□□□□ -0.593e-6■■■■□ 22.3
LSM11P83369 MCM5-202ENST00000382011 2402 ntTSL 2 BASIC11.21□□□□□ -0.613e-6■■■■□ 22.3
LSM11P83369 MCM5-209ENST00000493076 4599 ntTSL 210.37□□□□□ -0.753e-6■■■■□ 22.3
LSM11P83369 NDST2-201ENST00000299641 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.83e-6■■■■□ 22.3
LSM11P83369 SNORD3B-1-203ENST00000631292 217 nt10□□□□□ -0.813e-6■■■■□ 22.3
LSM11P83369 MCM5-201ENST00000216122 3534 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.833e-6■■■■□ 22.3
LSM11P83369 SNORD3B-1-202ENST00000617128 218 nt9.85□□□□□ -0.833e-6■■■■□ 22.3
LSM11P83369 NDST2-202ENST00000309979 3749 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.883e-6■■■■□ 22.3
LSM11P83369 SRRT-205ENST00000449389 448 ntTSL 39.37□□□□□ -0.913e-6■■■■□ 22.3
LSM11P83369 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.193e-6■■■■□ 22.3
LSM11P83369 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.43□□□□□ -0.11e-8■■■■□ 22.2
LSM11P83369 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC12.01□□□□□ -0.491e-8■■■■□ 22.2
LSM11P83369 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC10.84□□□□□ -0.671e-8■■■■□ 22.2
LSM11P83369 WDR6-208ENST00000452875 3916 ntTSL 1 (best)10.74□□□□□ -0.692e-8■■■■□ 22.2
LSM11P83369 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.791e-8■■■■□ 22.2
LSM11P83369 AC093323.1-202ENST00000635031 2045 ntBASIC22.14■■□□□ 1.135e-8■■■■□ 22.2
LSM11P83369 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.515e-14■■■■□ 22.2
LSM11P83369 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.185e-14■■■■□ 22.2
LSM11P83369 TMEM41B-201ENST00000299596 1443 ntTSL 1 (best)12.03□□□□□ -0.485e-14■■■■□ 22.2
LSM11P83369 TMEM41B-202ENST00000524543 3848 ntTSL 211.02□□□□□ -0.655e-14■■■■□ 22.2
LSM11P83369 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.51■□□□□ 0.873e-9■■■■□ 22.2
LSM11P83369 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.633e-9■■■■□ 22.2
LSM11P83369 MOGS-204ENST00000448666 1616 ntTSL 1 (best)17.4■□□□□ 0.383e-9■■■■□ 22.2
LSM11P83369 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.283e-9■■■■□ 22.2
LSM11P83369 MOGS-207ENST00000462443 532 ntTSL 216.1■□□□□ 0.173e-9■■■■□ 22.2
LSM11P83369 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.043e-9■■■■□ 22.2
LSM11P83369 HIP1R-204ENST00000535831 3078 ntTSL 214.89□□□□□ -0.033e-9■■■■□ 22.2
LSM11P83369 MOGS-206ENST00000462189 2400 ntTSL 212.67□□□□□ -0.383e-9■■■■□ 22.2
LSM11P83369 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC7.64□□□□□ -1.193e-9■■■■□ 22.2
LSM11P83369 MOGS-209ENST00000489655 489 ntTSL 36.5□□□□□ -1.373e-9■■■■□ 22.2
LSM11P83369 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.493e-9■■■■□ 22.2
LSM11P83369 UBE2J2-207ENST00000435198 1056 ntTSL 322.82■■□□□ 1.241e-6■■■■□ 22.2
LSM11P83369 UBE2J2-210ENST00000464036 1256 ntTSL 320.6■□□□□ 0.891e-6■■■■□ 22.2
LSM11P83369 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.741e-6■■■■□ 22.2
LSM11P83369 UBE2J2-214ENST00000473215 1028 ntTSL 319.02■□□□□ 0.641e-6■■■■□ 22.2
LSM11P83369 UBE2J2-220ENST00000509720 472 ntTSL 316.94■□□□□ 0.31e-6■■■■□ 22.2
LSM11P83369 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.23■□□□□ 0.191e-6■■■■□ 22.2
LSM11P83369 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.68■□□□□ 0.11e-6■■■■□ 22.2
LSM11P83369 NAPRT-201ENST00000340490 1774 ntTSL 1 (best)22.81■■□□□ 1.244e-6■■■■□ 22.2
LSM11P83369 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.924e-6■■■■□ 22.2
LSM11P83369 ABCA7-206ENST00000525073 1918 ntTSL 219.62■□□□□ 0.734e-7■■■■□ 22.2
LSM11P83369 GLI4-209ENST00000522479 435 ntTSL 319.27■□□□□ 0.684e-6■■■■□ 22.2
LSM11P83369 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.614e-6■■■■□ 22.2
LSM11P83369 GLI4-204ENST00000517530 563 ntTSL 218.82■□□□□ 0.64e-6■■■■□ 22.2
LSM11P83369 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.574e-6■■■■□ 22.2
LSM11P83369 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.544e-6■■■■□ 22.2
LSM11P83369 PPP1R12C-206ENST00000590268 830 ntTSL 218.05■□□□□ 0.482e-6■■■■□ 22.2
LSM11P83369 TSPAN32-211ENST00000484104 725 ntTSL 217.85■□□□□ 0.454e-6■■■■□ 22.2
LSM11P83369 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.82■□□□□ 0.444e-6■■■■□ 22.2
LSM11P83369 ADCK5-205ENST00000529654 2027 ntTSL 1 (best)17.77■□□□□ 0.433e-6■■■■□ 22.2
LSM11P83369 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.55■□□□□ 0.44e-6■■■■□ 22.2
LSM11P83369 PILRB-204ENST00000438028 1822 ntTSL 1 (best)17.54■□□□□ 0.41e-7■■■■□ 22.2
LSM11P83369 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.19■□□□□ 0.344e-6■■■■□ 22.2
LSM11P83369 PILRB-202ENST00000422808 1599 ntTSL 1 (best)17.15■□□□□ 0.341e-7■■■■□ 22.2
LSM11P83369 PILRB-206ENST00000443526 1364 ntTSL 1 (best)17.01■□□□□ 0.311e-7■■■■□ 22.2
LSM11P83369 PILRB-210ENST00000457519 2074 ntTSL 1 (best)16.85■□□□□ 0.291e-7■■■■□ 22.2
LSM11P83369 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.77■□□□□ 0.284e-6■■■■□ 22.2
LSM11P83369 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.274e-6■■■■□ 22.2
LSM11P83369 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.273e-6■■■■□ 22.2
LSM11P83369 VARS2-209ENST00000477288 6054 ntTSL 216.55■□□□□ 0.242e-6■■■■□ 22.2
LSM11P83369 NAPRT-207ENST00000464332 1212 ntTSL 216.49■□□□□ 0.234e-6■■■■□ 22.2
LSM11P83369 LRRC41-205ENST00000498402 2068 ntTSL 216.45■□□□□ 0.224e-6■■■■□ 22.2
LSM11P83369 UBE2J2-216ENST00000488418 750 ntTSL 216.34■□□□□ 0.211e-7■■■■□ 22.2
LSM11P83369 PILRB-201ENST00000419749 1506 ntTSL 1 (best)16.18■□□□□ 0.181e-7■■■■□ 22.2
LSM11P83369 LUC7L-215ENST00000468732 573 ntTSL 216.09■□□□□ 0.173e-11■■■■□ 22.2
LSM11P83369 LUC7L-211ENST00000442701 423 ntTSL 316.09■□□□□ 0.173e-11■■■■□ 22.2
LSM11P83369 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.124e-6■■■■□ 22.2
LSM11P83369 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.73■□□□□ 0.114e-6■■■■□ 22.2
LSM11P83369 TSPAN32-215ENST00000493948 641 ntTSL 315.67■□□□□ 0.14e-6■■■■□ 22.2
LSM11P83369 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.6■□□□□ 0.094e-6■■■■□ 22.2
LSM11P83369 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.012e-6■■■■□ 22.2
LSM11P83369 VARS2-207ENST00000476162 2228 ntTSL 1 (best)15□□□□□ -0.012e-6■■■■□ 22.2
LSM11P83369 PPP1R12C-207ENST00000591938 1262 ntTSL 514.72□□□□□ -0.059e-7■■■■□ 22.2
LSM11P83369 PDCD6-208ENST00000511482 878 ntTSL 514.59□□□□□ -0.074e-6■■■■□ 22.2
LSM11P83369 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.48□□□□□ -0.092e-6■■■■□ 22.2
LSM11P83369 NAPRT-213ENST00000529179 454 ntTSL 214.35□□□□□ -0.114e-6■■■■□ 22.2
LSM11P83369 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.34□□□□□ -0.114e-6■■■■□ 22.2
LSM11P83369 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.26□□□□□ -0.132e-6■■■■□ 22.2
LSM11P83369 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.22□□□□□ -0.134e-6■■■■□ 22.2
Retrieved 100 of 11,495 protein–RNA pairs in 62.2 ms