RNA–Protein interactions for RNA: ENST00000557041.1

TMEM55B-207, humanhuman

TSL 2

Gene TMEM55B, Length 3,453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-207ENST00000557041 NISCHQ9Y2I1 1504 aa30.54■■■□□ 2.48
TMEM55B-207ENST00000557041 DCAF8L2P0C7V8 631 aa27.52■■■□□ 2
TMEM55B-207ENST00000557041 SHROOM4Q9ULL8 1493 aa27.43■■□□□ 1.98
TMEM55B-207ENST00000557041 SUPT5HO00267 1087 aaKnown RBP27.04■■□□□ 1.92
TMEM55B-207ENST00000557041 ZCCHC6Q5VYS8 1495 aaKnown RBP25.61■■□□□ 1.69
TMEM55B-207ENST00000557041 EHMT2Q96KQ7 1210 aa25.5■■□□□ 1.67
TMEM55B-207ENST00000557041 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
TMEM55B-207ENST00000557041 CCDC180Q9P1Z9 1646 aa25.36■■□□□ 1.65
TMEM55B-207ENST00000557041 FAM9AQ8IZU1 332 aaPredicted RBP25.23■■□□□ 1.63
TMEM55B-207ENST00000557041 LOC105371045A0A1W2PR82 267 aa25.16■■□□□ 1.62
TMEM55B-207ENST00000557041 PCGF6Q9BYE7 350 aa25.15■■□□□ 1.62
TMEM55B-207ENST00000557041 ABCC9O60706 1549 aa25.11■■□□□ 1.61
TMEM55B-207ENST00000557041 TRIM41Q8WV44 630 aa24.89■■□□□ 1.58
TMEM55B-207ENST00000557041 MYO15BQ96JP2 1530 aa24.85■■□□□ 1.57
TMEM55B-207ENST00000557041 SCRIBQ14160 1630 aa24.75■■□□□ 1.55
TMEM55B-207ENST00000557041 PPARGC1BQ86YN6 1023 aaKnown RBP24.57■■□□□ 1.52
TMEM55B-207ENST00000557041 TTBK1Q5TCY1 1321 aaPredicted RBP24.53■■□□□ 1.52
TMEM55B-207ENST00000557041 PABPN1Q86U42 306 aaKnown RBP eCLIP24.47■■□□□ 1.51
TMEM55B-207ENST00000557041 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.5
TMEM55B-207ENST00000557041 HRCP23327 699 aa24.42■■□□□ 1.5
TMEM55B-207ENST00000557041 RSF1Q96T23 1441 aaPredicted RBP24.38■■□□□ 1.49
TMEM55B-207ENST00000557041 CECR2Q9BXF3 1484 aa24.22■■□□□ 1.47
TMEM55B-207ENST00000557041 TRIM26Q12899 539 aaPredicted RBP24.19■■□□□ 1.46
TMEM55B-207ENST00000557041 RANGAP1P46060 587 aaPredicted RBP24.16■■□□□ 1.46
TMEM55B-207ENST00000557041 UBTFP17480 764 aaKnown RBP24.02■■□□□ 1.44
TMEM55B-207ENST00000557041 RB1CC1Q8TDY2 1594 aa23.98■■□□□ 1.43
TMEM55B-207ENST00000557041 NACADO15069 1562 aa23.93■■□□□ 1.42
TMEM55B-207ENST00000557041 MROH2BQ7Z745 1585 aa23.92■■□□□ 1.42
TMEM55B-207ENST00000557041 CCER1Q8TC90 406 aaPredicted RBP23.76■■□□□ 1.39
TMEM55B-207ENST00000557041 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.72■■□□□ 1.39
TMEM55B-207ENST00000557041 WIZO95785 1651 aa23.7■■□□□ 1.39
TMEM55B-207ENST00000557041 APLP2Q06481 763 aa23.56■■□□□ 1.36
TMEM55B-207ENST00000557041 ZEB1P37275 1124 aaPredicted RBP23.55■■□□□ 1.36
TMEM55B-207ENST00000557041 CSRNP3Q8WYN3 585 aa23.5■■□□□ 1.35
TMEM55B-207ENST00000557041 BAZ1AQ9NRL2 1556 aaPredicted RBP23.49■■□□□ 1.35
TMEM55B-207ENST00000557041 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
TMEM55B-207ENST00000557041 HNRNPUL2Q1KMD3 747 aaKnown RBP23.44■■□□□ 1.34
TMEM55B-207ENST00000557041 CCDC88BA6NC98 1476 aa23.4■■□□□ 1.34
TMEM55B-207ENST00000557041 SOGA1O94964 1423 aa23.36■■□□□ 1.33
TMEM55B-207ENST00000557041 ATP1B4Q9UN42 357 aaPredicted RBP23.25■■□□□ 1.31
TMEM55B-207ENST00000557041 ITGAEP38570 1179 aa23.17■■□□□ 1.3
TMEM55B-207ENST00000557041 SMARCA4P51532 1647 aa23.17■■□□□ 1.3
TMEM55B-207ENST00000557041 RUSC2Q8N2Y8 1516 aa23.16■■□□□ 1.3
TMEM55B-207ENST00000557041 CEP162Q5TB80 1403 aa23.14■■□□□ 1.3
TMEM55B-207ENST00000557041 WRNQ14191 1432 aaPredicted RBP eCLIP23.13■■□□□ 1.29
TMEM55B-207ENST00000557041 TOP2AP11388 1531 aaKnown RBP23.13■■□□□ 1.29
TMEM55B-207ENST00000557041 BAZ1BQ9UIG0 1483 aaKnown RBP23.07■■□□□ 1.28
TMEM55B-207ENST00000557041 SMARCA2P51531 1590 aa23.02■■□□□ 1.28
TMEM55B-207ENST00000557041 YTHDC1Q96MU7 727 aaKnown RBP23.01■■□□□ 1.27
TMEM55B-207ENST00000557041 TNIKQ9UKE5 1360 aa22.94■■□□□ 1.26
TMEM55B-207ENST00000557041 DIEXFQ68CQ4 756 aaKnown RBP22.92■■□□□ 1.26
TMEM55B-207ENST00000557041 P3H3Q8IVL6 736 aa22.92■■□□□ 1.26
TMEM55B-207ENST00000557041 ATAD2BQ9ULI0 1458 aa22.9■■□□□ 1.26
TMEM55B-207ENST00000557041 CLIP1P30622 1438 aa22.87■■□□□ 1.25
TMEM55B-207ENST00000557041 GOLGA3Q08378 1498 aa22.86■■□□□ 1.25
TMEM55B-207ENST00000557041 BICRAQ9NZM4 1560 aa22.82■■□□□ 1.24
TMEM55B-207ENST00000557041 UNC13AQ9UPW8 1703 aa22.81■■□□□ 1.24
TMEM55B-207ENST00000557041 EEA1Q15075 1411 aa22.79■■□□□ 1.24
TMEM55B-207ENST00000557041 CEP164Q9UPV0 1460 aa22.71■■□□□ 1.23
TMEM55B-207ENST00000557041 RAPGEF2Q9Y4G8 1499 aa22.67■■□□□ 1.22
TMEM55B-207ENST00000557041 FAM50AQ14320 339 aaKnown RBP22.65■■□□□ 1.22
TMEM55B-207ENST00000557041 CENPBP07199 599 aaPredicted RBP22.65■■□□□ 1.22
TMEM55B-207ENST00000557041 ZNF316A6NFI3 1004 aaPredicted RBP22.61■■□□□ 1.21
TMEM55B-207ENST00000557041 SYNJ1O43426 1573 aa22.6■■□□□ 1.21
TMEM55B-207ENST00000557041 KANK4Q5T7N3 995 aaPredicted RBP22.59■■□□□ 1.21
TMEM55B-207ENST00000557041 EIF4G1Q04637 1599 aaKnown RBP22.54■■□□□ 1.2
TMEM55B-207ENST00000557041 ARID3CA6NKF2 412 aa22.54■■□□□ 1.2
TMEM55B-207ENST00000557041 SCAF1Q9H7N4 1312 aaKnown RBP22.51■■□□□ 1.19
TMEM55B-207ENST00000557041 NEUROD1Q13562 356 aa22.5■■□□□ 1.19
TMEM55B-207ENST00000557041 KIF27Q86VH2 1401 aa22.49■■□□□ 1.19
TMEM55B-207ENST00000557041 VPS8Q8N3P4 1428 aa22.47■■□□□ 1.19
TMEM55B-207ENST00000557041 GTF3C3Q9Y5Q9 886 aa22.44■■□□□ 1.18
TMEM55B-207ENST00000557041 CUX2O14529 1486 aa22.41■■□□□ 1.18
TMEM55B-207ENST00000557041 ACIN1Q9UKV3 1341 aaKnown RBP22.39■■□□□ 1.17
TMEM55B-207ENST00000557041 MIER1Q8N108 512 aa22.38■■□□□ 1.17
TMEM55B-207ENST00000557041 NCAPD3P42695 1498 aa22.31■■□□□ 1.16
TMEM55B-207ENST00000557041 CARMIL1Q5VZK9 1371 aa22.29■■□□□ 1.16
TMEM55B-207ENST00000557041 CADPSQ9ULU8 1353 aa22.28■■□□□ 1.16
TMEM55B-207ENST00000557041 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
TMEM55B-207ENST00000557041 DNAJC5BQ9UF47 199 aa22.25■■□□□ 1.15
TMEM55B-207ENST00000557041 HIRIP3Q9BW71 556 aaPredicted RBP22.23■■□□□ 1.15
TMEM55B-207ENST00000557041 KIF21BO75037 1637 aa22.21■■□□□ 1.15
TMEM55B-207ENST00000557041 CUX1P39880 1505 aa22.2■■□□□ 1.14
TMEM55B-207ENST00000557041 FBLN2P98095 1184 aa22.19■■□□□ 1.14
TMEM55B-207ENST00000557041 IGF1RP08069 1367 aa22.17■■□□□ 1.14
TMEM55B-207ENST00000557041 TDRD9Q8NDG6 1382 aaKnown RBP22.17■■□□□ 1.14
TMEM55B-207ENST00000557041 CFTRP13569 1480 aa22.14■■□□□ 1.13
TMEM55B-207ENST00000557041 TOP2BQ02880 1626 aa22.14■■□□□ 1.13
TMEM55B-207ENST00000557041 ARAP1Q96P48 1450 aa22.14■■□□□ 1.13
TMEM55B-207ENST00000557041 SIN3AQ96ST3 1273 aa22.14■■□□□ 1.13
TMEM55B-207ENST00000557041 CHIC2Q9UKJ5 165 aa22.13■■□□□ 1.13
TMEM55B-207ENST00000557041 CCNB3Q8WWL7 1395 aa22.12■■□□□ 1.13
TMEM55B-207ENST00000557041 RAD54L2Q9Y4B4 1467 aa22.1■■□□□ 1.13
TMEM55B-207ENST00000557041 TRIM52Q96A61 297 aa22.09■■□□□ 1.13
TMEM55B-207ENST00000557041 PRXQ9BXM0 1461 aa22.09■■□□□ 1.13
TMEM55B-207ENST00000557041 CNGB1Q14028 1251 aaPredicted RBP22.08■■□□□ 1.13
TMEM55B-207ENST00000557041 NESP48681 1621 aa22.08■■□□□ 1.13
TMEM55B-207ENST00000557041 FGD5Q6ZNL6 1462 aa22.08■■□□□ 1.12
TMEM55B-207ENST00000557041 FANCD2Q9BXW9 1451 aa22.05■■□□□ 1.12
TMEM55B-207ENST00000557041 FHOD3Q2V2M9 1422 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms