Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HIST1H3A-201ENST00000613854 411 ntAPPRIS P1 BASIC13.88□□□□□ -0.191e-6■■■■□ 20.7
YBX3P16989 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.412e-6■■■■□ 20.7
YBX3P16989 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.252e-6■■■■□ 20.7
YBX3P16989 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.293e-6■■■■□ 20.7
YBX3P16989 ETV3-202ENST00000368192 5254 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.884e-6■■■■□ 20.7
YBX3P16989 ZNF385A-215ENST00000552382 1516 ntTSL 325.6■■□□□ 1.693e-6■■■■□ 20.7
YBX3P16989 ZNF385A-211ENST00000550779 2099 ntTSL 520.21■□□□□ 0.833e-6■■■■□ 20.7
YBX3P16989 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.36■□□□□ 0.693e-6■■■■□ 20.7
YBX3P16989 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.56■□□□□ 0.563e-6■■■■□ 20.7
YBX3P16989 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.28■□□□□ 0.523e-6■■■■□ 20.7
YBX3P16989 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.57■□□□□ 0.43e-6■■■■□ 20.7
YBX3P16989 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.283e-6■■■■□ 20.7
YBX3P16989 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.57■□□□□ 0.083e-6■■■■□ 20.7
YBX3P16989 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.83■■■□□ 2.692e-6■■■■□ 20.7
YBX3P16989 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.83■■■□□ 2.692e-6■■■■□ 20.7
YBX3P16989 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.83■■■□□ 2.692e-6■■■■□ 20.7
YBX3P16989 ARL6IP6-205ENST00000495469 1308 ntTSL 227.95■■■□□ 2.072e-8■■■■□ 20.7
YBX3P16989 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.61■■■□□ 2.012e-6■■■■□ 20.7
YBX3P16989 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC27.33■■□□□ 1.971e-6■■■■□ 20.7
YBX3P16989 AL020996.2-201ENST00000559265 568 ntTSL 425.71■■□□□ 1.711e-6■■■■□ 20.7
YBX3P16989 MED25-212ENST00000618715 1467 ntTSL 5 BASIC25.2■■□□□ 1.622e-6■■■■□ 20.7
YBX3P16989 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC24.5■■□□□ 1.513e-9■■■■□ 20.7
YBX3P16989 FLII-217ENST00000577402 689 ntTSL 223.61■■□□□ 1.371e-6■■■■□ 20.7
YBX3P16989 ALKBH3-203ENST00000527029 569 ntTSL 221.76■■□□□ 1.071e-6■■■■□ 20.7
YBX3P16989 ALKBH3-202ENST00000524742 842 ntTSL 221.39■■□□□ 1.011e-6■■■■□ 20.7
YBX3P16989 MED25-207ENST00000595185 760 ntTSL 1 (best)21.27■■□□□ 12e-6■■■■□ 20.7
YBX3P16989 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.25■□□□□ 0.992e-6■■■■□ 20.7
YBX3P16989 SKA3-204ENST00000462482 750 ntTSL 221.03■□□□□ 0.961e-6■■■■□ 20.7
YBX3P16989 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.932e-6■■■■□ 20.7
YBX3P16989 ALKBH3-212ENST00000534171 764 ntTSL 520.37■□□□□ 0.851e-6■■■■□ 20.7
YBX3P16989 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.71e-6■■■■□ 20.7
YBX3P16989 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC18.75■□□□□ 0.591e-6■■■■□ 20.7
YBX3P16989 PSME1-208ENST00000561059 947 ntTSL 218.45■□□□□ 0.541e-6■■■■□ 20.7
YBX3P16989 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.512e-8■■■■□ 20.7
YBX3P16989 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.431e-6■■■■□ 20.7
YBX3P16989 TRUB2-202ENST00000460320 933 ntTSL 216.79■□□□□ 0.281e-6■■■■□ 20.7
YBX3P16989 MED25-209ENST00000612791 881 ntTSL 5 BASIC16.71■□□□□ 0.272e-6■■■■□ 20.7
YBX3P16989 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.9■□□□□ 0.143e-9■■■■□ 20.7
YBX3P16989 TMCO3-205ENST00000465556 314 ntTSL 315.88■□□□□ 0.133e-9■■■■□ 20.7
YBX3P16989 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.041e-6■■■■□ 20.7
YBX3P16989 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 03e-9■■■■□ 20.7
YBX3P16989 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.11e-6■■■■□ 20.7
YBX3P16989 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.11e-6■■■■□ 20.7
YBX3P16989 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.231e-6■■■■□ 20.7
YBX3P16989 FAM32A-202ENST00000585831 896 ntTSL 213.16□□□□□ -0.31e-6■■■■□ 20.7
YBX3P16989 RALA-201ENST00000005257 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.411e-6■■■■□ 20.7
YBX3P16989 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.491e-6■■■■□ 20.7
YBX3P16989 DOCK2-217ENST00000540750 1753 ntTSL 5 BASIC10.54□□□□□ -0.721e-6■■■■□ 20.7
YBX3P16989 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC10.37□□□□□ -0.751e-6■■■■□ 20.7
YBX3P16989 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.811e-6■■■■□ 20.7
YBX3P16989 MED13L-204ENST00000548784 485 ntTSL 39.89□□□□□ -0.831e-6■■■■□ 20.7
YBX3P16989 DOCK2-208ENST00000520181 1154 ntTSL 59.59□□□□□ -0.871e-6■■■■□ 20.7
YBX3P16989 TP53BP1-205ENST00000413546 3143 ntTSL 59.36□□□□□ -0.911e-6■■■■□ 20.7
YBX3P16989 EEF1A1P12-201ENST00000443590 1346 ntBASIC9.2□□□□□ -0.941e-6■■■■□ 20.7
YBX3P16989 DOCK2-205ENST00000519628 631 ntTSL 37.73□□□□□ -1.171e-6■■■■□ 20.7
YBX3P16989 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.2□□□□□ -1.261e-6■■■■□ 20.7
YBX3P16989 DMD-204ENST00000358062 6773 ntTSL 57.06□□□□□ -1.281e-6■■■■□ 20.7
YBX3P16989 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.77□□□□□ -1.331e-6■■■■□ 20.7
YBX3P16989 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.57□□□□□ -1.361e-6■■■■□ 20.7
YBX3P16989 CNOT7-209ENST00000522062 444 ntTSL 26.45□□□□□ -1.383e-12■■■■□ 20.7
YBX3P16989 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.44□□□□□ -1.381e-6■■■■□ 20.7
YBX3P16989 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.41□□□□□ -1.381e-6■■■■□ 20.7
YBX3P16989 ARL6IP6-204ENST00000463690 1402 ntTSL 26.4□□□□□ -1.392e-8■■■■□ 20.7
YBX3P16989 ARL6IP6-202ENST00000425034 465 ntTSL 25.56□□□□□ -1.522e-8■■■■□ 20.7
YBX3P16989 DOCK2-210ENST00000520836 713 ntTSL 34.73□□□□□ -1.651e-6■■■■□ 20.7
YBX3P16989 ARL6IP6-203ENST00000455875 479 ntTSL 24.66□□□□□ -1.662e-8■■■■□ 20.7
YBX3P16989 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.71e-6■■■■□ 20.7
YBX3P16989 MIR29B2-201ENST00000385055 81 ntBASIC4.32□□□□□ -1.721e-6■■■■□ 20.7
YBX3P16989 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.741e-6■■■■□ 20.7
YBX3P16989 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.751e-6■■■■□ 20.7
YBX3P16989 DMD-219ENST00000471779 362 ntTSL 1 (best)3.88□□□□□ -1.791e-6■■■■□ 20.7
YBX3P16989 CNOT7-203ENST00000518541 426 ntTSL 23.29□□□□□ -1.883e-12■■■■□ 20.7
YBX3P16989 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.941e-6■■■■□ 20.7
YBX3P16989 TIMM50-218ENST00000602028 770 ntTSL 527.95■■■□□ 2.063e-9■■■■□ 20.7
YBX3P16989 TIMM50-209ENST00000597666 604 ntTSL 327.95■■■□□ 2.063e-9■■■■□ 20.7
YBX3P16989 TIMM50-217ENST00000601403 769 ntTSL 525.31■■□□□ 1.643e-9■■■■□ 20.7
YBX3P16989 TIMM50-203ENST00000594583 680 ntTSL 323.61■■□□□ 1.373e-9■■■■□ 20.7
YBX3P16989 TIMM50-219ENST00000602265 786 ntTSL 218.93■□□□□ 0.623e-9■■■■□ 20.7
YBX3P16989 TIMM50-212ENST00000599733 669 ntTSL 318.93■□□□□ 0.623e-9■■■■□ 20.7
YBX3P16989 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.482e-6■■■■□ 20.7
YBX3P16989 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.871e-8■■■■□ 20.7
YBX3P16989 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.131e-8■■■■□ 20.7
YBX3P16989 DEDD2-203ENST00000593804 1586 ntTSL 225.1■■□□□ 1.612e-6■■■■□ 20.7
YBX3P16989 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.532e-6■■■■□ 20.7
YBX3P16989 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.83■■□□□ 1.242e-6■■■■□ 20.7
YBX3P16989 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.895e-7■■■■□ 20.7
YBX3P16989 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC22.49■■□□□ 1.192e-26■■■■□ 20.7
YBX3P16989 LRPPRC-205ENST00000447246 1209 ntTSL 1 (best)21.72■■□□□ 1.072e-26■■■■□ 20.7
YBX3P16989 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.09■□□□□ 0.812e-26■■■■□ 20.7
YBX3P16989 DONSON-213ENST00000462566 430 ntTSL 28.13□□□□□ -1.116e-8■■■■□ 20.6
YBX3P16989 DONSON-207ENST00000440810 703 ntTSL 57.02□□□□□ -1.296e-8■■■■□ 20.6
YBX3P16989 ANXA2-228ENST00000560014 2339 ntTSL 210.16□□□□□ -0.788e-9■■■■□ 20.6
YBX3P16989 ANXA2-205ENST00000504475 3528 ntTSL 28.74□□□□□ -1.018e-9■■■■□ 20.6
YBX3P16989 ANXA2-218ENST00000559176 744 ntTSL 54.34□□□□□ -1.718e-9■■■■□ 20.6
YBX3P16989 UFC1-204ENST00000473766 888 ntTSL 216.68■□□□□ 0.264e-7■■■■□ 20.6
YBX3P16989 UFC1-203ENST00000467540 803 ntTSL 515.38■□□□□ 0.054e-7■■■■□ 20.6
YBX3P16989 UFC1-205ENST00000482672 492 ntTSL 1 (best)13.99□□□□□ -0.174e-7■■■■□ 20.6
YBX3P16989 UFC1-202ENST00000463735 339 ntTSL 28.55□□□□□ -1.044e-7■■■■□ 20.6
YBX3P16989 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.93■■□□□ 1.265e-6■■■■□ 20.6
YBX3P16989 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.875e-6■■■■□ 20.6
Retrieved 100 of 29,075 protein–RNA pairs in 536.7 ms