RNA–Protein interactions for RNA: ENST00000398868.7

ATL3-201, Transcript of atlastin GTPase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ATL3, Length 7,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-201ENST00000398868 DCAF8L2P0C7V8 631 aa16.97■□□□□ 0.31
ATL3-201ENST00000398868 EHMT2Q96KQ7 1210 aa15.97■□□□□ 0.15
ATL3-201ENST00000398868 SUPT5HO00267 1087 aaKnown RBP15.62■□□□□ 0.09
ATL3-201ENST00000398868 SHROOM4Q9ULL8 1493 aa15.47■□□□□ 0.07
ATL3-201ENST00000398868 TTBK1Q5TCY1 1321 aaPredicted RBP15.28■□□□□ 0.04
ATL3-201ENST00000398868 RANGAP1P46060 587 aaPredicted RBP15.12■□□□□ 0.01
ATL3-201ENST00000398868 FAM9AQ8IZU1 332 aaPredicted RBP14.98□□□□□ -0.01
ATL3-201ENST00000398868 PELP1Q8IZL8 1130 aaKnown RBP14.92□□□□□ -0.02
ATL3-201ENST00000398868 ATP1B4Q9UN42 357 aaPredicted RBP14.84□□□□□ -0.03
ATL3-201ENST00000398868 APLP2Q06481 763 aa14.7□□□□□ -0.06
ATL3-201ENST00000398868 ERICH6Q7L0X2 663 aa14.69□□□□□ -0.06
ATL3-201ENST00000398868 MYT1Q01538 1121 aa14.59□□□□□ -0.07
ATL3-201ENST00000398868 PCGF6Q9BYE7 350 aa14.53□□□□□ -0.08
ATL3-201ENST00000398868 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
ATL3-201ENST00000398868 PPARGC1BQ86YN6 1023 aaKnown RBP14.47□□□□□ -0.09
ATL3-201ENST00000398868 NISCHQ9Y2I1 1504 aa14.38□□□□□ -0.11
ATL3-201ENST00000398868 MYT1LQ9UL68 1186 aa14.37□□□□□ -0.11
ATL3-201ENST00000398868 CNGB1Q14028 1251 aaPredicted RBP14.36□□□□□ -0.11
ATL3-201ENST00000398868 YTHDC1Q96MU7 727 aaKnown RBP14.34□□□□□ -0.11
ATL3-201ENST00000398868 CENPBP07199 599 aaPredicted RBP14.29□□□□□ -0.12
ATL3-201ENST00000398868 CCER1Q8TC90 406 aaPredicted RBP14.24□□□□□ -0.13
ATL3-201ENST00000398868 UBTFP17480 764 aaKnown RBP14.24□□□□□ -0.13
ATL3-201ENST00000398868 POLR3GLQ9BT43 218 aa14.22□□□□□ -0.13
ATL3-201ENST00000398868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.18□□□□□ -0.14
ATL3-201ENST00000398868 HNRNPUL2Q1KMD3 747 aaKnown RBP14.18□□□□□ -0.14
ATL3-201ENST00000398868 ITGAEP38570 1179 aa14.17□□□□□ -0.14
ATL3-201ENST00000398868 TRIM41Q8WV44 630 aa14.14□□□□□ -0.15
ATL3-201ENST00000398868 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
ATL3-201ENST00000398868 NEFLP07196 543 aa13.99□□□□□ -0.17
ATL3-201ENST00000398868 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.2
ATL3-201ENST00000398868 BCL11AQ9H165 835 aa13.81□□□□□ -0.2
ATL3-201ENST00000398868 ZEB1P37275 1124 aaPredicted RBP13.81□□□□□ -0.2
ATL3-201ENST00000398868 DAXXQ9UER7 740 aaPredicted RBP13.77□□□□□ -0.21
ATL3-201ENST00000398868 SLC24A1O60721 1099 aa13.7□□□□□ -0.22
ATL3-201ENST00000398868 PABPN1Q86U42 306 aaKnown RBP eCLIP13.69□□□□□ -0.22
ATL3-201ENST00000398868 LOC105371045A0A1W2PR82 267 aa13.69□□□□□ -0.22
ATL3-201ENST00000398868 FBLN2P98095 1184 aa13.69□□□□□ -0.22
ATL3-201ENST00000398868 ARID3CA6NKF2 412 aa13.67□□□□□ -0.22
ATL3-201ENST00000398868 BCANQ96GW7 911 aa13.58□□□□□ -0.24
ATL3-201ENST00000398868 HRCP23327 699 aa13.57□□□□□ -0.24
ATL3-201ENST00000398868 ZNF326Q5BKZ1 582 aaKnown RBP13.54□□□□□ -0.24
ATL3-201ENST00000398868 RTL5Q5HYW3 569 aaPredicted RBP13.54□□□□□ -0.24
ATL3-201ENST00000398868 FAM50AQ14320 339 aaKnown RBP13.54□□□□□ -0.24
ATL3-201ENST00000398868 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
ATL3-201ENST00000398868 NEUROD1Q13562 356 aa13.49□□□□□ -0.25
ATL3-201ENST00000398868 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
ATL3-201ENST00000398868 ZNF316A6NFI3 1004 aaPredicted RBP13.48□□□□□ -0.25
ATL3-201ENST00000398868 CLSPNQ9HAW4 1339 aa13.45□□□□□ -0.26
ATL3-201ENST00000398868 PLEKHG5O94827 1062 aa13.44□□□□□ -0.26
ATL3-201ENST00000398868 P3H3Q8IVL6 736 aa13.4□□□□□ -0.26
ATL3-201ENST00000398868 ABCC9O60706 1549 aa13.39□□□□□ -0.27
ATL3-201ENST00000398868 GTF3C3Q9Y5Q9 886 aa13.37□□□□□ -0.27
ATL3-201ENST00000398868 EIF5BO60841 1220 aaKnown RBP13.36□□□□□ -0.27
ATL3-201ENST00000398868 TRIM26Q12899 539 aaPredicted RBP13.34□□□□□ -0.27
ATL3-201ENST00000398868 DIEXFQ68CQ4 756 aaKnown RBP13.28□□□□□ -0.28
ATL3-201ENST00000398868 ZNF777Q9ULD5 760 aaPredicted RBP13.27□□□□□ -0.28
ATL3-201ENST00000398868 A0A0G2JS52 829 aa13.26□□□□□ -0.29
ATL3-201ENST00000398868 SCAF1Q9H7N4 1312 aaKnown RBP13.24□□□□□ -0.29
ATL3-201ENST00000398868 CHGAP10645 457 aaKnown RBP13.21□□□□□ -0.3
ATL3-201ENST00000398868 ZBTB7CA1YPR0 619 aa13.11□□□□□ -0.31
ATL3-201ENST00000398868 CDK11AQ9UQ88 783 aaPredicted RBP13.11□□□□□ -0.31
ATL3-201ENST00000398868 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
ATL3-201ENST00000398868 NPM2Q86SE8 214 aaKnown RBP13.1□□□□□ -0.31
ATL3-201ENST00000398868 STAG3Q9UJ98 1225 aa13.1□□□□□ -0.31
ATL3-201ENST00000398868 SALL2Q9Y467 1007 aaPredicted RBP13.09□□□□□ -0.31
ATL3-201ENST00000398868 ESF1Q9H501 851 aaKnown RBP13.08□□□□□ -0.31
ATL3-201ENST00000398868 ZBTB47Q9UFB7 747 aaPredicted RBP13.07□□□□□ -0.32
ATL3-201ENST00000398868 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.03□□□□□ -0.321e-7■■■■□ 24.1
ATL3-201ENST00000398868 ARXQ96QS3 562 aa13.01□□□□□ -0.33
ATL3-201ENST00000398868 NBR1Q14596 966 aa13.01□□□□□ -0.33
ATL3-201ENST00000398868 SENP3-EIF4A1A0A087X0R7 540 aa13□□□□□ -0.33
ATL3-201ENST00000398868 C14orf37Q86TY3 774 aa12.93□□□□□ -0.34
ATL3-201ENST00000398868 NEFMP07197 916 aa12.92□□□□□ -0.34
ATL3-201ENST00000398868 ACIN1Q9UKV3 1341 aaKnown RBP12.91□□□□□ -0.34
ATL3-201ENST00000398868 CHIC2Q9UKJ5 165 aa12.91□□□□□ -0.34
ATL3-201ENST00000398868 ANP32AP39687 249 aaKnown RBP12.9□□□□□ -0.34
ATL3-201ENST00000398868 ANP32CO43423 234 aa12.9□□□□□ -0.34
ATL3-201ENST00000398868 GLIPR1L2Q4G1C9 344 aa12.88□□□□□ -0.35
ATL3-201ENST00000398868 KDM2AQ9Y2K7 1162 aa12.86□□□□□ -0.35
ATL3-201ENST00000398868 TULP1O00294 542 aaPredicted RBP12.86□□□□□ -0.35
ATL3-201ENST00000398868 NPM1P06748 294 aaKnown RBP eCLIP12.84□□□□□ -0.35
ATL3-201ENST00000398868 HIRIP3Q9BW71 556 aaPredicted RBP12.84□□□□□ -0.35
ATL3-201ENST00000398868 FKBP8Q14318 412 aa12.83□□□□□ -0.36
ATL3-201ENST00000398868 KCNH8Q96L42 1107 aa12.82□□□□□ -0.36
ATL3-201ENST00000398868 TAOK2Q9UL54 1235 aa12.8□□□□□ -0.36
ATL3-201ENST00000398868 ARID4BQ4LE39 1312 aaPredicted RBP12.79□□□□□ -0.36
ATL3-201ENST00000398868 FAM9BQ8IZU0 186 aa12.78□□□□□ -0.36
ATL3-201ENST00000398868 TPRNQ4KMQ1 711 aa12.76□□□□□ -0.37
ATL3-201ENST00000398868 RTN4Q9NQC3 1192 aaKnown RBP12.75□□□□□ -0.37
ATL3-201ENST00000398868 ANP32BQ92688 251 aaKnown RBP12.74□□□□□ -0.37
ATL3-201ENST00000398868 HAP1P54257 671 aaPredicted RBP12.74□□□□□ -0.37
ATL3-201ENST00000398868 TRHP20396 242 aaPredicted RBP12.72□□□□□ -0.37
ATL3-201ENST00000398868 LMOD2Q6P5Q4 547 aa12.72□□□□□ -0.37
ATL3-201ENST00000398868 HSP90AA1P07900 732 aaKnown RBP12.7□□□□□ -0.38
ATL3-201ENST00000398868 IRX6P78412 446 aaPredicted RBP12.7□□□□□ -0.38
ATL3-201ENST00000398868 AMER1Q5JTC6 1135 aaPredicted RBP12.7□□□□□ -0.38
ATL3-201ENST00000398868 PPM1GO15355 546 aaPredicted RBP12.67□□□□□ -0.38
ATL3-201ENST00000398868 SCRIBQ14160 1630 aa12.66□□□□□ -0.38
ATL3-201ENST00000398868 DDX10Q13206 875 aaKnown RBP12.66□□□□□ -0.38
ATL3-201ENST00000398868 NCBP3Q53F19 620 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms