Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TCRBV3S1A0A5B6 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV3S1A0A5B6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.15■□□□□ 0.98
TCRBV3S1A0A5B6 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV3S1A0A5B6 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.15■□□□□ 0.98
TCRBV3S1A0A5B6 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.98
TCRBV3S1A0A5B6 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
TCRBV3S1A0A5B6 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV3S1A0A5B6 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV3S1A0A5B6 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.14■□□□□ 0.97
TCRBV3S1A0A5B6 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV3S1A0A5B6 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV3S1A0A5B6 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV3S1A0A5B6 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV3S1A0A5B6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.14■□□□□ 0.97
TCRBV3S1A0A5B6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 FBXW4P1-201ENST00000426721 2239 ntBASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV3S1A0A5B6 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TCRBV3S1A0A5B6 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV3S1A0A5B6 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 AC079630.1-202ENST00000618127 1840 ntBASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV3S1A0A5B6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TCRBV3S1A0A5B6 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TCRBV3S1A0A5B6 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 AC080038.3-201ENST00000623346 1952 ntBASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms