Protein–RNA interactions for Protein: Q9UND3

NPIPA1, Nuclear pore complex-interacting protein family member A1, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA1Q9UND3 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AL512430.1-201ENST00000392575 860 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 BANF1P3-201ENST00000412556 261 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 RPSAP15-201ENST00000448168 861 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC079112.1-201ENST00000454972 939 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 DUX4L50-201ENST00000455245 715 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC104784.1-201ENST00000473096 294 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 RN7SL530P-201ENST00000485097 298 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC027237.1-201ENST00000560942 655 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC093752.3-201ENST00000567343 901 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC007326.1-201ENST00000604539 458 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC087045.2-201ENST00000606279 1003 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 RN7SL736P-201ENST00000613111 269 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AP003419.4-201ENST00000616071 517 ntBASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA1Q9UND3 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AL928921.2-201ENST00000641325 2442 ntBASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AL807761.2-201ENST00000422849 729 ntBASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 RN7SL8P-201ENST00000461771 266 ntBASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AC124068.2-201ENST00000569473 1109 ntBASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 AC016397.2-201ENST00000624848 1985 ntBASIC13.11□□□□□ -0.31
NPIPA1Q9UND3 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.1□□□□□ -0.31
NPIPA1Q9UND3 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
NPIPA1Q9UND3 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms