Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC015802.1-201ENST00000588104 1449 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC097359.2-201ENST00000604992 2389 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 RPL18AP3-201ENST00000462885 528 ntBASIC13.01□□□□□ -0.33
LRFN1Q9P244 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CHCHD2P2-201ENST00000503744 321 ntBASIC13.01□□□□□ -0.33
LRFN1Q9P244 AC005740.1-201ENST00000515639 522 ntBASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 AC107464.3-201ENST00000609172 737 ntBASIC13.01□□□□□ -0.33
LRFN1Q9P244 AC025262.2-201ENST00000623975 1056 ntBASIC13.01□□□□□ -0.33
LRFN1Q9P244 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LRFN1Q9P244 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
LRFN1Q9P244 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 HSPA8P5-201ENST00000456928 2069 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13□□□□□ -0.33
LRFN1Q9P244 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms