Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.12□□□□□ -0.31
RNF4P78317 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 AL591122.2-201ENST00000624125 1853 ntBASIC13.12□□□□□ -0.31
RNF4P78317 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.12□□□□□ -0.31
RNF4P78317 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 MAGEA5-201ENST00000446757 942 ntBASIC13.12□□□□□ -0.31
RNF4P78317 FTH1P22-201ENST00000456305 520 ntBASIC13.12□□□□□ -0.31
RNF4P78317 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.12□□□□□ -0.31
RNF4P78317 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.12□□□□□ -0.31
RNF4P78317 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.12□□□□□ -0.31
RNF4P78317 AC132872.1-201ENST00000566986 1195 ntBASIC13.12□□□□□ -0.31
RNF4P78317 NDUFB10P1-201ENST00000567319 521 ntBASIC13.12□□□□□ -0.31
RNF4P78317 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.12□□□□□ -0.31
RNF4P78317 AL133467.4-201ENST00000602953 725 ntBASIC13.12□□□□□ -0.31
RNF4P78317 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 MST1P2-201ENST00000457982 2291 ntBASIC13.12□□□□□ -0.31
RNF4P78317 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
RNF4P78317 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.12□□□□□ -0.31
RNF4P78317 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.12□□□□□ -0.31
RNF4P78317 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
RNF4P78317 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
RNF4P78317 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 AC010327.5-201ENST00000586923 3061 ntBASIC13.11□□□□□ -0.31
RNF4P78317 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
RNF4P78317 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.11□□□□□ -0.31
RNF4P78317 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
RNF4P78317 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
RNF4P78317 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.11□□□□□ -0.31
RNF4P78317 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.11□□□□□ -0.31
RNF4P78317 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
RNF4P78317 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.11□□□□□ -0.31
RNF4P78317 AC019193.1-201ENST00000506678 823 ntBASIC13.11□□□□□ -0.31
RNF4P78317 RNA5SP423-201ENST00000517127 109 ntBASIC13.11□□□□□ -0.31
RNF4P78317 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.11□□□□□ -0.31
RNF4P78317 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.11□□□□□ -0.31
RNF4P78317 AC051619.9-201ENST00000623237 597 ntBASIC13.11□□□□□ -0.31
RNF4P78317 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.11□□□□□ -0.31
RNF4P78317 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.11□□□□□ -0.31
RNF4P78317 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 AL139158.3-201ENST00000641212 1562 ntBASIC13.11□□□□□ -0.31
RNF4P78317 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
RNF4P78317 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.11□□□□□ -0.31
RNF4P78317 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms