Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC11.49□□□□□ -0.57
LMO4P61968 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC11.49□□□□□ -0.57
LMO4P61968 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 GALP-202ENST00000440823 889 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC11.49□□□□□ -0.57
LMO4P61968 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 HNRNPA1P56-201ENST00000505767 954 ntBASIC11.49□□□□□ -0.57
LMO4P61968 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC11.49□□□□□ -0.57
LMO4P61968 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 TREHP1-201ENST00000531328 465 ntBASIC11.49□□□□□ -0.57
LMO4P61968 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC11.49□□□□□ -0.57
LMO4P61968 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC11.49□□□□□ -0.57
LMO4P61968 MT3-202ENST00000561640 514 ntTSL 3 BASIC11.49□□□□□ -0.57
LMO4P61968 USB1-205ENST00000561743 1135 ntTSL 3 BASIC11.49□□□□□ -0.57
LMO4P61968 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
LMO4P61968 AC055811.3-201ENST00000584952 686 ntBASIC11.49□□□□□ -0.57
LMO4P61968 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 AC006483.2-201ENST00000609813 515 ntBASIC11.49□□□□□ -0.57
LMO4P61968 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC11.49□□□□□ -0.57
LMO4P61968 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC11.49□□□□□ -0.57
LMO4P61968 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
LMO4P61968 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
LMO4P61968 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC11.49□□□□□ -0.57
LMO4P61968 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.49□□□□□ -0.57
LMO4P61968 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LMO4P61968 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 NHP2-202ENST00000314397 599 ntTSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
LMO4P61968 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC11.48□□□□□ -0.57
LMO4P61968 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 LINP1-201ENST00000417112 917 ntTSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 FAM21EP-201ENST00000417804 985 ntBASIC11.48□□□□□ -0.57
LMO4P61968 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC11.48□□□□□ -0.57
LMO4P61968 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
LMO4P61968 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC11.48□□□□□ -0.57
LMO4P61968 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC11.48□□□□□ -0.57
LMO4P61968 AC005777.1-201ENST00000588332 187 ntBASIC11.48□□□□□ -0.57
LMO4P61968 AP005264.6-204ENST00000588436 719 ntBASIC11.48□□□□□ -0.57
LMO4P61968 AL136982.5-201ENST00000605222 294 ntBASIC11.48□□□□□ -0.57
LMO4P61968 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 AC244250.3-201ENST00000620749 366 ntBASIC11.48□□□□□ -0.57
LMO4P61968 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 NRADDP-202ENST00000641269 1585 ntBASIC11.48□□□□□ -0.57
LMO4P61968 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC11.48□□□□□ -0.57
LMO4P61968 AC093462.1-201ENST00000621167 1683 ntBASIC11.48□□□□□ -0.57
LMO4P61968 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC11.48□□□□□ -0.57
LMO4P61968 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.48□□□□□ -0.57
LMO4P61968 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LMO4P61968 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
LMO4P61968 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LMO4P61968 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms