Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
LRFN1Q9P244 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LRFN1Q9P244 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
LRFN1Q9P244 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LRFN1Q9P244 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LRFN1Q9P244 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LRFN1Q9P244 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.04□□□□□ -0.32
LRFN1Q9P244 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LRFN1Q9P244 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC006372.4-201ENST00000624122 1543 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 AL390755.1-201ENST00000623716 2027 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC098934.1-203ENST00000442868 1262 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 ERP29P1-201ENST00000442902 706 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 HERC2P11-201ENST00000562845 725 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 DNM1P30-201ENST00000563586 452 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 NDUFB10P1-201ENST00000567319 521 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC100756.2-201ENST00000569537 736 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 NUDT4P2-201ENST00000578341 546 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 RPL17P45-201ENST00000586289 509 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC084781.1-201ENST00000613737 656 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC092978.1-202ENST00000637590 1327 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 AC007952.5-201ENST00000572818 1486 ntBASIC13.03□□□□□ -0.32
LRFN1Q9P244 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.03□□□□□ -0.32
LRFN1Q9P244 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
LRFN1Q9P244 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
LRFN1Q9P244 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LRFN1Q9P244 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
LRFN1Q9P244 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LRFN1Q9P244 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.02□□□□□ -0.32
LRFN1Q9P244 AL022313.4-201ENST00000562756 2046 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC067931.2-201ENST00000623655 2003 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 BX679664.3-201ENST00000414070 555 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC113935.1-201ENST00000471722 555 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 MIR3180-2-201ENST00000581748 88 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 AP000322.3-201ENST00000608665 388 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 AP003419.4-201ENST00000616071 517 ntBASIC13.02□□□□□ -0.33
LRFN1Q9P244 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.02□□□□□ -0.33
LRFN1Q9P244 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LRFN1Q9P244 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms