Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL031673.1-201ENST00000611460 466 ntBASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 AL022313.4-201ENST00000562756 2046 ntBASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 AC026748.1-201ENST00000624349 3251 ntBASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 AC005089.1-201ENST00000619486 2241 ntBASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
NPAS3Q8IXF0 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 AC007191.1-201ENST00000623179 2995 ntBASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 OR2W2P-201ENST00000406313 909 ntBASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 KRT18P4-201ENST00000422599 1288 ntBASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 RN7SL556P-201ENST00000582856 298 ntBASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
NPAS3Q8IXF0 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 PSAT1P2-201ENST00000426107 972 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ASS1P2-201ENST00000439895 1223 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 VENTXP4-201ENST00000449029 958 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ABHD17AP9-201ENST00000561925 548 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 AL160191.2-201ENST00000603975 601 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 AL139339.2-201ENST00000608063 657 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NPAS3Q8IXF0 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms