Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 FAM90A12P-201ENST00000519497 2375 ntBASIC14.83□□□□□ -0.04
HDAC4P56524 FAM90A24P-201ENST00000520792 2369 ntBASIC14.83□□□□□ -0.04
HDAC4P56524 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC4P56524 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC4P56524 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HDAC4P56524 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC4P56524 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.82□□□□□ -0.04
HDAC4P56524 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.82□□□□□ -0.04
HDAC4P56524 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC4P56524 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 MEG3_2.1-201ENST00000611456 105 ntBASIC14.82□□□□□ -0.04
HDAC4P56524 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
HDAC4P56524 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 NAP1L6-202ENST00000641404 1222 ntBASIC14.82□□□□□ -0.04
HDAC4P56524 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 AL590824.1-201ENST00000403828 1349 ntBASIC14.82□□□□□ -0.04
HDAC4P56524 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.82□□□□□ -0.04
HDAC4P56524 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.82□□□□□ -0.04
HDAC4P56524 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 RPL13AP3-202ENST00000494676 1473 ntBASIC14.82□□□□□ -0.04
HDAC4P56524 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HDAC4P56524 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC4P56524 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC4P56524 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 AL157791.1-201ENST00000553667 1699 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC4P56524 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC4P56524 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 AC099548.2-209ENST00000480264 625 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 RN7SL530P-201ENST00000485097 298 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 SCARNA20.5-201ENST00000516991 142 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.81□□□□□ -0.04
HDAC4P56524 MIR6799-201ENST00000620297 69 ntBASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms