Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
HOXA1P49639 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC11.87□□□□□ -0.51
HOXA1P49639 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 METTL26-204ENST00000397665 558 ntTSL 2 BASIC11.87□□□□□ -0.51
HOXA1P49639 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
HOXA1P49639 AC055876.2-201ENST00000531834 546 ntBASIC11.87□□□□□ -0.51
HOXA1P49639 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.87□□□□□ -0.51
HOXA1P49639 IFT20-208ENST00000578985 831 ntTSL 3 BASIC11.87□□□□□ -0.51
HOXA1P49639 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 AC023511.2-201ENST00000618803 211 ntBASIC11.87□□□□□ -0.51
HOXA1P49639 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 AC011481.3-201ENST00000623895 5594 ntBASIC11.87□□□□□ -0.51
HOXA1P49639 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
HOXA1P49639 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HOXA1P49639 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC11.87□□□□□ -0.51
HOXA1P49639 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 AC060814.4-201ENST00000594169 2163 ntBASIC11.86□□□□□ -0.51
HOXA1P49639 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 ATP2C1-221ENST00000513801 3439 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 AC011498.7-201ENST00000624986 2027 ntBASIC11.86□□□□□ -0.51
HOXA1P49639 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 NOS3-203ENST00000461406 3644 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.86□□□□□ -0.51
HOXA1P49639 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HOXA1P49639 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC11.86□□□□□ -0.51
HOXA1P49639 METTL21AP1-201ENST00000438852 635 ntBASIC11.86□□□□□ -0.51
HOXA1P49639 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC11.86□□□□□ -0.51
HOXA1P49639 AC004890.2-204ENST00000481968 304 ntBASIC11.86□□□□□ -0.51
HOXA1P49639 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC11.86□□□□□ -0.51
HOXA1P49639 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HOXA1P49639 RPL28-205ENST00000558131 444 ntTSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC11.86□□□□□ -0.51
HOXA1P49639 WDR88-203ENST00000592765 651 ntTSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.86□□□□□ -0.51
HOXA1P49639 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC11.86□□□□□ -0.51
HOXA1P49639 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms