Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.4□□□□□ -0.1
SHROOM3Q8TF72 AL109837.1-201ENST00000603272 613 ntBASIC14.4□□□□□ -0.1
SHROOM3Q8TF72 SNORA50.1-201ENST00000628590 135 ntBASIC14.4□□□□□ -0.1
SHROOM3Q8TF72 CASP16P-204ENST00000635032 809 ntBASIC14.4□□□□□ -0.1
SHROOM3Q8TF72 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.4□□□□□ -0.1
SHROOM3Q8TF72 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHROOM3Q8TF72 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 AC007952.5-201ENST00000572818 1486 ntBASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 RPSAP15-201ENST00000448168 861 ntBASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 NOC2LP1-201ENST00000450578 752 ntBASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PRKXP1-201ENST00000561423 1122 ntBASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 LINC00638-201ENST00000555578 2518 ntBASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.39□□□□□ -0.11
SHROOM3Q8TF72 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PPP1R2P4-201ENST00000424051 595 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 NDUFS6P1-201ENST00000485187 316 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 CHCHD2P2-201ENST00000503744 321 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 SLC25A15P3-201ENST00000505530 290 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 IGLV3-15-201ENST00000518356 244 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC090857.1-201ENST00000527400 390 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL021707.6-201ENST00000609212 491 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AP001065.2-201ENST00000617205 644 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 COX6A1P2-201ENST00000620597 330 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC025271.4-201ENST00000621477 1726 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms