Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC10.09□□□□□ -0.79
RPL39P62891 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
RPL39P62891 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC10.09□□□□□ -0.79
RPL39P62891 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
RPL39P62891 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
RPL39P62891 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC10.09□□□□□ -0.79
RPL39P62891 GOLGA2P5-201ENST00000266746 2395 ntBASIC10.09□□□□□ -0.79
RPL39P62891 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
RPL39P62891 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
RPL39P62891 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
RPL39P62891 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
RPL39P62891 AC104758.3-203ENST00000562938 2123 ntBASIC10.09□□□□□ -0.79
RPL39P62891 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
RPL39P62891 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
RPL39P62891 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC10.09□□□□□ -0.79
RPL39P62891 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 AC009093.10-201ENST00000641956 1442 ntBASIC10.08□□□□□ -0.8
RPL39P62891 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 AC010970.1-201ENST00000445125 1848 ntBASIC10.08□□□□□ -0.8
RPL39P62891 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 RPF1-202ENST00000370656 724 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC10.08□□□□□ -0.8
RPL39P62891 MEP1AP4-201ENST00000423244 1087 ntBASIC10.08□□□□□ -0.8
RPL39P62891 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 MYCLP2-201ENST00000449268 967 ntBASIC10.08□□□□□ -0.8
RPL39P62891 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC10.08□□□□□ -0.8
RPL39P62891 FADS2-205ENST00000517839 469 ntTSL 3 BASIC10.08□□□□□ -0.8
RPL39P62891 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC10.08□□□□□ -0.8
RPL39P62891 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 JPT2-214ENST00000569765 782 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC10.08□□□□□ -0.8
RPL39P62891 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC10.08□□□□□ -0.8
RPL39P62891 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 METTL26-214ENST00000614890 801 ntTSL 3 BASIC10.08□□□□□ -0.8
RPL39P62891 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 USP47-202ENST00000339865 7775 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 PER1-202ENST00000354903 3115 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
RPL39P62891 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
RPL39P62891 OR2I1P-208ENST00000641137 4948 ntBASIC10.08□□□□□ -0.8
RPL39P62891 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
RPL39P62891 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
RPL39P62891 PHB-210ENST00000511832 1509 ntTSL 2 BASIC10.07□□□□□ -0.8
RPL39P62891 GHET1-201ENST00000627071 1906 ntBASIC10.07□□□□□ -0.8
RPL39P62891 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC10.07□□□□□ -0.8
RPL39P62891 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
RPL39P62891 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC10.07□□□□□ -0.8
RPL39P62891 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
RPL39P62891 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
RPL39P62891 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
RPL39P62891 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC10.07□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms