Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AC244157.2-201ENST00000616239 1006 ntBASIC14.07□□□□□ -0.16
COL6A2P12110 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
COL6A2P12110 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL6A2P12110 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.06□□□□□ -0.16
COL6A2P12110 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 AC006122.1-201ENST00000493323 440 ntBASIC14.06□□□□□ -0.16
COL6A2P12110 GOLGA2P8-201ENST00000505201 779 ntBASIC14.06□□□□□ -0.16
COL6A2P12110 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.06□□□□□ -0.16
COL6A2P12110 AL160314.3-201ENST00000556041 767 ntBASIC14.06□□□□□ -0.16
COL6A2P12110 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL6A2P12110 AL162426.1-201ENST00000624141 743 ntBASIC14.06□□□□□ -0.16
COL6A2P12110 AC008687.7-202ENST00000637404 953 ntBASIC14.06□□□□□ -0.16
COL6A2P12110 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL6A2P12110 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 AL358781.1-202ENST00000321081 1360 ntBASIC14.06□□□□□ -0.16
COL6A2P12110 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL6A2P12110 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A2P12110 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A2P12110 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A2P12110 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A2P12110 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A2P12110 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
COL6A2P12110 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A2P12110 CYP4F23P-201ENST00000593402 1579 ntBASIC14.05□□□□□ -0.16
COL6A2P12110 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL6A2P12110 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A2P12110 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
COL6A2P12110 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A2P12110 KRT18P36-201ENST00000411618 1276 ntBASIC14.05□□□□□ -0.16
COL6A2P12110 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL6A2P12110 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A2P12110 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.05□□□□□ -0.16
COL6A2P12110 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A2P12110 IGHV3-72-202ENST00000621503 303 ntBASIC14.05□□□□□ -0.16
COL6A2P12110 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A2P12110 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms