Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RN7SL646P-201ENST00000492969 297 ntBASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHANK3Q9BYB0 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 MKRN7P-201ENST00000433469 1371 ntBASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 RN7SL300P-201ENST00000582522 318 ntBASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 AL078624.1-201ENST00000604004 547 ntBASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 MARK2P9-201ENST00000430958 1727 ntBASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.59■□□□□ 0.41
SHANK3Q9BYB0 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AC009812.1-201ENST00000605948 1059 ntBASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AC211476.2-201ENST00000608799 708 ntBASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 AC027601.5-201ENST00000624065 2482 ntBASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHANK3Q9BYB0 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 AL157996.1-201ENST00000624684 2299 ntBASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 AC152010.1-201ENST00000415779 2006 ntBASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 COQ4-202ENST00000372875 928 ntTSL 2 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 HMGA1P2-201ENST00000430198 324 ntBASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 AL954722.1-201ENST00000431238 259 ntBASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 SRP9P1-201ENST00000445874 261 ntBASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 AC022447.5-201ENST00000504817 392 ntBASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 MDC1-209ENST00000613547 830 ntTSL 5 BASIC17.58■□□□□ 0.4
SHANK3Q9BYB0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 DUX4L31-201ENST00000446466 1136 ntBASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 RN7SL363P-201ENST00000482412 273 ntBASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 FAM86JP-202ENST00000484500 988 ntBASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC17.57■□□□□ 0.4
SHANK3Q9BYB0 AP001120.3-201ENST00000585729 489 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms