Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEDD4P46934 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEDD4P46934 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 FAM90A12P-201ENST00000519497 2375 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 FAM90A24P-201ENST00000520792 2369 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.61■□□□□ 0.25
NEDD4P46934 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.61■□□□□ 0.25
NEDD4P46934 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.61■□□□□ 0.25
NEDD4P46934 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 MRPL22P1-201ENST00000505398 616 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 AC019193.1-201ENST00000506678 823 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC16.61■□□□□ 0.25
NEDD4P46934 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 AC138894.2-201ENST00000602838 371 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 AC051619.9-201ENST00000623237 597 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 AC068587.10-201ENST00000641210 219 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 CICP17-201ENST00000418553 2377 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.61■□□□□ 0.25
NEDD4P46934 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.61■□□□□ 0.25
NEDD4P46934 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEDD4P46934 AC093462.1-201ENST00000621167 1683 ntBASIC16.61■□□□□ 0.25
NEDD4P46934 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
NEDD4P46934 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.6■□□□□ 0.25
NEDD4P46934 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.6■□□□□ 0.25
NEDD4P46934 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.6■□□□□ 0.25
NEDD4P46934 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
NEDD4P46934 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD4P46934 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
NEDD4P46934 OR2I1P-210ENST00000642037 4691 ntBASIC16.6■□□□□ 0.25
NEDD4P46934 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD4P46934 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
NEDD4P46934 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD4P46934 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.59■□□□□ 0.25
NEDD4P46934 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD4P46934 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD4P46934 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms