Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.37e-7■□□□□ 8.2
YBX3P16989 ITPR2-205ENST00000538984 586 ntTSL 310.2□□□□□ -0.787e-7■□□□□ 8.2
YBX3P16989 ITPR2-203ENST00000451599 2577 ntTSL 1 (best)10.17□□□□□ -0.787e-7■□□□□ 8.2
YBX3P16989 SSR1-205ENST00000475213 446 ntTSL 316.35■□□□□ 0.211e-11■□□□□ 8.2
YBX3P16989 ATP2A2-209ENST00000550248 544 ntTSL 48.08□□□□□ -1.127e-8■□□□□ 8.2
YBX3P16989 TRIM28-209ENST00000597423 733 ntTSL 318.1■□□□□ 0.492e-19■□□□□ 8.2
YBX3P16989 TRIM28-210ENST00000597618 609 ntTSL 214.47□□□□□ -0.092e-19■□□□□ 8.2
YBX3P16989 FLNB-213ENST00000491408 475 ntTSL 36.71□□□□□ -1.341e-10■□□□□ 8.2
YBX3P16989 WSB2-205ENST00000536738 824 ntTSL 338.81■■■■□ 3.83e-6■□□□□ 8.2
YBX3P16989 HSF1-206ENST00000528988 775 ntTSL 334.02■■■■□ 3.045e-9■□□□□ 8.2
YBX3P16989 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.253e-6■□□□□ 8.2
YBX3P16989 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.083e-6■□□□□ 8.2
YBX3P16989 VAT1-203ENST00000587062 600 ntTSL 426.54■■□□□ 1.846e-13■□□□□ 8.2
YBX3P16989 TIPARP-203ENST00000473702 1770 ntTSL 225.94■■□□□ 1.743e-6■□□□□ 8.2
YBX3P16989 KLHL8-204ENST00000504029 593 ntTSL 425.8■■□□□ 1.723e-6■□□□□ 8.2
YBX3P16989 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.42■■□□□ 1.663e-6■□□□□ 8.2
YBX3P16989 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.72■■□□□ 1.553e-6■□□□□ 8.2
YBX3P16989 WSB2-207ENST00000540129 1524 ntTSL 1 (best)24.72■■□□□ 1.553e-6■□□□□ 8.2
YBX3P16989 GTF2E2-205ENST00000523499 768 ntTSL 424.53■■□□□ 1.523e-6■□□□□ 8.2
YBX3P16989 VAT1-208ENST00000590924 613 ntTSL 324.31■■□□□ 1.486e-13■□□□□ 8.2
YBX3P16989 GLRX3-203ENST00000481034 1921 ntTSL 1 (best)24.08■■□□□ 1.453e-6■□□□□ 8.2
YBX3P16989 PKD1-229ENST00000564890 574 ntTSL 524.04■■□□□ 1.443e-6■□□□□ 8.2
YBX3P16989 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.44■■□□□ 1.343e-6■□□□□ 8.2
YBX3P16989 LASP1-209ENST00000585841 1408 ntTSL 223.13■■□□□ 1.293e-6■□□□□ 8.2
YBX3P16989 FBXW5-207ENST00000487794 1932 ntTSL 1 (best)23.03■■□□□ 1.283e-6■□□□□ 8.2
YBX3P16989 PKD1-224ENST00000561991 964 ntTSL 522.7■■□□□ 1.223e-6■□□□□ 8.2
YBX3P16989 STAMBP-206ENST00000432295 1156 ntTSL 522.33■■□□□ 1.173e-6■□□□□ 8.2
YBX3P16989 PKD1-230ENST00000565639 1976 ntTSL 522.25■■□□□ 1.153e-6■□□□□ 8.2
YBX3P16989 LASP1-207ENST00000581485 617 ntTSL 322.11■■□□□ 1.133e-6■□□□□ 8.2
YBX3P16989 LASP1-202ENST00000419929 762 ntTSL 321.66■■□□□ 1.063e-6■□□□□ 8.2
YBX3P16989 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.58■■□□□ 1.056e-13■□□□□ 8.2
YBX3P16989 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.043e-6■□□□□ 8.2
YBX3P16989 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.913e-6■□□□□ 8.2
YBX3P16989 LASP1-205ENST00000443937 1482 ntTSL 1 (best)20.59■□□□□ 0.893e-6■□□□□ 8.2
YBX3P16989 CAPN1-213ENST00000527897 879 ntTSL 320.55■□□□□ 0.883e-6■□□□□ 8.2
YBX3P16989 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.883e-6■□□□□ 8.2
YBX3P16989 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.48■□□□□ 0.873e-6■□□□□ 8.2
YBX3P16989 LASP1-206ENST00000579123 1874 ntTSL 220.47■□□□□ 0.873e-6■□□□□ 8.2
YBX3P16989 SEC24D-208ENST00000506622 1319 ntTSL 219.97■□□□□ 0.793e-6■□□□□ 8.2
YBX3P16989 MARF1-206ENST00000548216 2529 ntTSL 519.87■□□□□ 0.773e-6■□□□□ 8.2
YBX3P16989 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.763e-6■□□□□ 8.2
YBX3P16989 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.743e-6■□□□□ 8.2
YBX3P16989 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.713e-6■□□□□ 8.2
YBX3P16989 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.46■□□□□ 0.713e-6■□□□□ 8.2
YBX3P16989 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.683e-6■□□□□ 8.2
YBX3P16989 UBE2I-209ENST00000562470 433 ntTSL 219.22■□□□□ 0.676e-13■□□□□ 8.2
YBX3P16989 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.623e-6■□□□□ 8.2
YBX3P16989 TLN1-204ENST00000465002 543 ntTSL 418.79■□□□□ 0.65e-9■□□□□ 8.2
YBX3P16989 AFDN-218ENST00000507704 1031 ntTSL 318.15■□□□□ 0.53e-6■□□□□ 8.2
YBX3P16989 HSPA4L-203ENST00000508549 1822 ntTSL 1 (best)18.09■□□□□ 0.493e-6■□□□□ 8.2
YBX3P16989 FUBP3-205ENST00000487406 840 ntTSL 517.87■□□□□ 0.453e-6■□□□□ 8.2
YBX3P16989 PKD1-228ENST00000564865 480 ntTSL 517.85■□□□□ 0.453e-6■□□□□ 8.2
YBX3P16989 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.77■□□□□ 0.443e-6■□□□□ 8.2
YBX3P16989 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC17.74■□□□□ 0.433e-6■□□□□ 8.2
YBX3P16989 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.363e-6■□□□□ 8.2
YBX3P16989 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.323e-6■□□□□ 8.2
YBX3P16989 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.313e-6■□□□□ 8.2
YBX3P16989 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.263e-6■□□□□ 8.2
YBX3P16989 NFIC-207ENST00000589164 435 ntTSL 316.67■□□□□ 0.263e-6■□□□□ 8.2
YBX3P16989 C12orf73-209ENST00000552460 540 ntTSL 316.63■□□□□ 0.253e-6■□□□□ 8.2
YBX3P16989 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.223e-6■□□□□ 8.2
YBX3P16989 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.223e-6■□□□□ 8.2
YBX3P16989 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC16.42■□□□□ 0.223e-6■□□□□ 8.2
YBX3P16989 CAPN1-204ENST00000526468 690 ntTSL 316.24■□□□□ 0.193e-6■□□□□ 8.2
YBX3P16989 C12orf73-202ENST00000543740 1730 ntTSL 1 (best)16.04■□□□□ 0.163e-6■□□□□ 8.2
YBX3P16989 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.153e-6■□□□□ 8.2
YBX3P16989 PKD1-220ENST00000487932 6464 ntTSL 515.62■□□□□ 0.093e-6■□□□□ 8.2
YBX3P16989 C12orf73-205ENST00000547945 463 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.093e-6■□□□□ 8.2
YBX3P16989 POLB-213ENST00000522610 1341 ntTSL 515.58■□□□□ 0.083e-6■□□□□ 8.2
YBX3P16989 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC15.11■□□□□ 0.013e-6■□□□□ 8.2
YBX3P16989 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.98□□□□□ -0.013e-6■□□□□ 8.2
YBX3P16989 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.79□□□□□ -0.043e-6■□□□□ 8.2
YBX3P16989 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.78□□□□□ -0.043e-6■□□□□ 8.2
YBX3P16989 POLB-201ENST00000265421 1329 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.083e-6■□□□□ 8.2
YBX3P16989 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.093e-6■□□□□ 8.2
YBX3P16989 BPNT1-207ENST00000482136 546 ntTSL 314.48□□□□□ -0.093e-6■□□□□ 8.2
YBX3P16989 PKD1-222ENST00000496574 4419 ntTSL 514.31□□□□□ -0.123e-6■□□□□ 8.2
YBX3P16989 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.123e-6■□□□□ 8.2
YBX3P16989 MARF1-207ENST00000549219 581 ntTSL 514.24□□□□□ -0.133e-6■□□□□ 8.2
YBX3P16989 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.143e-6■□□□□ 8.2
YBX3P16989 PKD1-219ENST00000486339 4443 ntTSL 513.96□□□□□ -0.173e-6■□□□□ 8.2
YBX3P16989 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.183e-6■□□□□ 8.2
YBX3P16989 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC13.75□□□□□ -0.213e-6■□□□□ 8.2
YBX3P16989 TRIP12-210ENST00000453485 652 ntTSL 313.65□□□□□ -0.223e-6■□□□□ 8.2
YBX3P16989 QRICH1-211ENST00000489642 1021 ntTSL 513.65□□□□□ -0.223e-6■□□□□ 8.2
YBX3P16989 PKD1-202ENST00000415938 3386 ntTSL 513.65□□□□□ -0.233e-6■□□□□ 8.2
YBX3P16989 UBE2V1-218ENST00000490289 628 ntTSL 313.5□□□□□ -0.253e-6■□□□□ 8.2
YBX3P16989 C12orf73-203ENST00000546540 590 ntTSL 2 BASIC13.3□□□□□ -0.283e-6■□□□□ 8.2
YBX3P16989 ANAPC5-203ENST00000422342 1141 ntTSL 213.28□□□□□ -0.283e-6■□□□□ 8.2
YBX3P16989 QRICH1-204ENST00000424300 3009 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.293e-6■□□□□ 8.2
YBX3P16989 UBE2V1-217ENST00000486653 563 ntTSL 412.9□□□□□ -0.343e-6■□□□□ 8.2
YBX3P16989 PKD1-216ENST00000483731 4193 ntTSL 512.87□□□□□ -0.353e-6■□□□□ 8.2
YBX3P16989 C12orf73-206ENST00000547975 1243 ntTSL 3 BASIC12.76□□□□□ -0.373e-6■□□□□ 8.2
YBX3P16989 BPNT1-202ENST00000354807 1152 ntTSL 5 BASIC12.7□□□□□ -0.383e-6■□□□□ 8.2
YBX3P16989 SEPT7-212ENST00000634591 740 ntTSL 512.7□□□□□ -0.383e-6■□□□□ 8.2
YBX3P16989 C12orf73-208ENST00000549960 620 ntTSL 312.62□□□□□ -0.393e-6■□□□□ 8.2
YBX3P16989 TIPARP-202ENST00000461166 4181 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.43e-6■□□□□ 8.2
YBX3P16989 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC12.57□□□□□ -0.43e-6■□□□□ 8.2
YBX3P16989 POLB-209ENST00000521290 863 ntTSL 512.22□□□□□ -0.453e-6■□□□□ 8.2
YBX3P16989 CUL4B-203ENST00000371323 846 ntTSL 512.21□□□□□ -0.453e-6■□□□□ 8.2
Retrieved 100 of 29,075 protein–RNA pairs in 586.5 ms