Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MIR4453-201ENST00000584019 89 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 AC010969.2-201ENST00000602458 3231 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 AC120114.3-201ENST00000611923 658 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
CXCL1P09341 AL603764.1-201ENST00000636452 321 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 EGLN3-205ENST00000547327 2849 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 EPN3-201ENST00000268933 4071 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 CD27-AS1-209ENST00000545339 1766 ntTSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 TXLNG-202ENST00000398155 3998 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 SLC20A2-201ENST00000342228 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 ABCC4-207ENST00000629385 2903 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 NAB1-203ENST00000409641 2472 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 GRIA4-202ENST00000393125 2994 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 PTCD2-212ENST00000543322 2029 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 VPS52-218ENST00000482399 3338 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 SEC23B-201ENST00000262544 3176 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 GLIPR2-202ENST00000377960 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 AC092053.3-201ENST00000641308 4975 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 LINC01106-201ENST00000436665 2244 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 HYOU1-217ENST00000612687 4360 ntTSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 EBF1-201ENST00000313708 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC11.04□□□□□ -0.64
CXCL1P09341 AIPL1-201ENST00000250087 2783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 BMP2-201ENST00000378827 3601 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CXCL1P09341 CSF3R-204ENST00000373104 2953 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 AC004461.1-201ENST00000412461 403 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 TLE1P1-201ENST00000422965 589 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.04□□□□□ -0.64
CXCL1P09341 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC11.04□□□□□ -0.64
CXCL1P09341 ALG1L5P-201ENST00000482043 771 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 ZNF890P-202ENST00000530367 1156 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 AL512356.2-201ENST00000546955 174 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC11.04□□□□□ -0.64
CXCL1P09341 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 AC004835.2-201ENST00000603762 682 ntBASIC11.04□□□□□ -0.64
CXCL1P09341 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 AP002754.1-201ENST00000506329 2349 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 P2RX1-201ENST00000225538 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 AQP7-205ENST00000379507 2879 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC11.04□□□□□ -0.64
CXCL1P09341 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CXCL1P09341 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.04□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms