Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 SIRPB3P-201ENST00000340424 1216 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 HNRNPABP1-201ENST00000406003 734 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 FAM21EP-201ENST00000417804 985 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 OR2A1-AS1-203ENST00000468575 568 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 HNRNPA1P56-201ENST00000505767 954 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 RN7SL605P-201ENST00000577229 281 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 AC087072.1-201ENST00000603727 421 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 NFIC-211ENST00000641145 8399 ntBASIC15.32■□□□□ 0.04
LRCH3Q96II8 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC026748.1-201ENST00000624349 3251 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 HDGF-202ENST00000368206 960 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 HNRNPA1P59-201ENST00000430583 918 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC008494.1-201ENST00000497612 796 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 RN7SKP155-201ENST00000516031 288 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AL132994.1-201ENST00000554098 400 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 AP005264.5-201ENST00000590066 467 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 AL353729.2-201ENST00000605859 1249 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 AC010531.8-201ENST00000623341 685 ntBASIC15.31■□□□□ 0.04
LRCH3Q96II8 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 ESR1-214ENST00000638569 132 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.31■□□□□ 0.04
LRCH3Q96II8 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRCH3Q96II8 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms