Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.4■□□□□ 0.22
SHROOM1Q2M3G4 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SHROOM1Q2M3G4 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SHROOM1Q2M3G4 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.39■□□□□ 0.22
SHROOM1Q2M3G4 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 AL365181.3-201ENST00000605886 3222 ntBASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 AC117489.1-201ENST00000625169 3217 ntBASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 BCAS2P2-201ENST00000425064 674 ntBASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 AL022344.2-201ENST00000568976 968 ntBASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 AC132825.4-202ENST00000578792 434 ntBASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 AC055811.3-201ENST00000584952 686 ntBASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHROOM1Q2M3G4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 C8orf49-201ENST00000525043 1968 ntBASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM1Q2M3G4 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AC004554.1-201ENST00000422830 1468 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 PES1P2-201ENST00000449745 1735 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AL928654.5-201ENST00000624831 2501 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 HCG27-204ENST00000424675 895 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 PSMD4P1-201ENST00000433951 1109 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AL135901.1-201ENST00000451812 333 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 FOXN3-AS2-201ENST00000554071 1262 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 DNM1P51-201ENST00000558149 522 ntBASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM1Q2M3G4 AC010632.2-201ENST00000588369 1224 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms