Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.9□□□□□ -0.34
FREM3P0C091 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
FREM3P0C091 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.9□□□□□ -0.34
FREM3P0C091 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.9□□□□□ -0.34
FREM3P0C091 FAM90A12P-201ENST00000519497 2375 ntBASIC12.9□□□□□ -0.34
FREM3P0C091 FAM90A24P-201ENST00000520792 2369 ntBASIC12.9□□□□□ -0.34
FREM3P0C091 SARS-202ENST00000369923 1882 ntTSL 5 BASIC12.9□□□□□ -0.34
FREM3P0C091 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.9□□□□□ -0.34
FREM3P0C091 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FREM3P0C091 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
FREM3P0C091 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
FREM3P0C091 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
FREM3P0C091 AC092506.1-202ENST00000401022 528 ntBASIC12.89□□□□□ -0.35
FREM3P0C091 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 AC078991.1-201ENST00000437297 610 ntBASIC12.89□□□□□ -0.35
FREM3P0C091 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC12.89□□□□□ -0.35
FREM3P0C091 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC12.89□□□□□ -0.35
FREM3P0C091 FOS-204ENST00000554617 796 ntTSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
FREM3P0C091 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 STK24P1-201ENST00000455035 1291 ntBASIC12.89□□□□□ -0.35
FREM3P0C091 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 AC005632.3-201ENST00000605544 308 ntBASIC12.89□□□□□ -0.35
FREM3P0C091 AL353770.1-201ENST00000614915 403 ntBASIC12.89□□□□□ -0.35
FREM3P0C091 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
FREM3P0C091 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FREM3P0C091 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FREM3P0C091 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.89□□□□□ -0.35
FREM3P0C091 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 AC117503.4-201ENST00000623229 1418 ntBASIC12.88□□□□□ -0.35
FREM3P0C091 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FREM3P0C091 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 AC239868.1-201ENST00000369385 493 ntBASIC12.88□□□□□ -0.35
FREM3P0C091 EEF1DP2-201ENST00000433698 843 ntBASIC12.88□□□□□ -0.35
FREM3P0C091 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC12.88□□□□□ -0.35
FREM3P0C091 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.88□□□□□ -0.35
FREM3P0C091 COG4-212ENST00000564653 590 ntTSL 5 BASIC12.88□□□□□ -0.35
FREM3P0C091 ELP5-212ENST00000574255 671 ntTSL 2 BASIC12.88□□□□□ -0.35
FREM3P0C091 RN7SL455P-201ENST00000580629 282 ntBASIC12.88□□□□□ -0.35
FREM3P0C091 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FREM3P0C091 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC12.88□□□□□ -0.35
FREM3P0C091 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
FREM3P0C091 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms