Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
SOX3P41225 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
SOX3P41225 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.49□□□□□ -0.25
SOX3P41225 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 TMEM198B-204ENST00000484016 896 ntBASIC13.49□□□□□ -0.25
SOX3P41225 HLA-J-204ENST00000495278 958 ntBASIC13.49□□□□□ -0.25
SOX3P41225 AC022217.1-201ENST00000521069 738 ntBASIC13.49□□□□□ -0.25
SOX3P41225 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.49□□□□□ -0.25
SOX3P41225 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.49□□□□□ -0.25
SOX3P41225 RBM8B-201ENST00000555532 525 ntBASIC13.49□□□□□ -0.25
SOX3P41225 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.49□□□□□ -0.25
SOX3P41225 NDUFV2P1-201ENST00000596415 907 ntBASIC13.49□□□□□ -0.25
SOX3P41225 HADH-202ENST00000403312 1752 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 AC023794.5-201ENST00000564380 2157 ntBASIC13.49□□□□□ -0.25
SOX3P41225 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 TMBIM7P-202ENST00000641474 1516 ntBASIC13.49□□□□□ -0.25
SOX3P41225 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX3P41225 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 AC009093.10-201ENST00000641956 1442 ntBASIC13.48□□□□□ -0.25
SOX3P41225 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 KHSRPP1-201ENST00000427983 1768 ntBASIC13.48□□□□□ -0.25
SOX3P41225 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
SOX3P41225 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
SOX3P41225 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 AC011742.3-201ENST00000439053 820 ntBASIC13.48□□□□□ -0.25
SOX3P41225 AC005077.2-201ENST00000449786 690 ntBASIC13.48□□□□□ -0.25
SOX3P41225 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.48□□□□□ -0.25
SOX3P41225 MARK2P5-201ENST00000507649 634 ntBASIC13.48□□□□□ -0.25
SOX3P41225 SNORD3B-2-202ENST00000571722 791 ntBASIC13.48□□□□□ -0.25
SOX3P41225 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 AC026740.1-201ENST00000607068 791 ntBASIC13.48□□□□□ -0.25
SOX3P41225 AP000346.4-201ENST00000614827 381 ntBASIC13.48□□□□□ -0.25
SOX3P41225 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
SOX3P41225 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 AC138969.2-201ENST00000532739 9932 ntBASIC13.48□□□□□ -0.25
SOX3P41225 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms