Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A5P29400 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
COL4A5P29400 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A5P29400 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL4A5P29400 ASS1P1-201ENST00000402854 1237 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 RFNG-202ENST00000429557 994 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A5P29400 AC092865.2-201ENST00000439409 971 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
COL4A5P29400 RN7SL838P-201ENST00000481676 295 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC16.46■□□□□ 0.23
COL4A5P29400 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC16.46■□□□□ 0.23
COL4A5P29400 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A5P29400 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A5P29400 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 MIR3940-201ENST00000579148 102 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 BOLA3P2-201ENST00000586496 323 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 SNORA50D-202ENST00000627561 132 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL4A5P29400 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
COL4A5P29400 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A5P29400 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A5P29400 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
COL4A5P29400 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 LINC02486-201ENST00000604157 3000 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 RPL4P6-201ENST00000438116 1304 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
COL4A5P29400 AC015813.5-201ENST00000624641 1514 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
COL4A5P29400 CA5BP1-205ENST00000435806 1064 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 SRP9P1-201ENST00000445874 261 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 AK2-208ENST00000487289 920 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A5P29400 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A5P29400 MYL6-215ENST00000549566 685 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A5P29400 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A5P29400 ABCD1P3-201ENST00000562927 605 ntBASIC16.46■□□□□ 0.23
COL4A5P29400 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL4A5P29400 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.22
COL4A5P29400 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL4A5P29400 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.45■□□□□ 0.22
COL4A5P29400 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.45■□□□□ 0.22
COL4A5P29400 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
COL4A5P29400 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
COL4A5P29400 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.45■□□□□ 0.22
COL4A5P29400 AC144831.1-201ENST00000573312 2656 ntBASIC16.45■□□□□ 0.22
COL4A5P29400 AP000437.1-201ENST00000624057 2085 ntBASIC16.45■□□□□ 0.22
COL4A5P29400 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC16.45■□□□□ 0.22
COL4A5P29400 RPSAP16-201ENST00000447583 821 ntBASIC16.45■□□□□ 0.22
COL4A5P29400 AP001102.1-201ENST00000528959 409 ntBASIC16.45■□□□□ 0.22
COL4A5P29400 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC16.45■□□□□ 0.22
COL4A5P29400 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.45■□□□□ 0.22
COL4A5P29400 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC16.45■□□□□ 0.22
COL4A5P29400 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC16.45■□□□□ 0.22
COL4A5P29400 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
COL4A5P29400 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.45■□□□□ 0.22
COL4A5P29400 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A5P29400 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.45■□□□□ 0.22
COL4A5P29400 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.44■□□□□ 0.22
COL4A5P29400 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 AP001331.1-201ENST00000413008 1015 ntBASIC16.44■□□□□ 0.22
COL4A5P29400 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 AC113398.1-201ENST00000464124 406 ntBASIC16.44■□□□□ 0.22
COL4A5P29400 RN7SL789P-201ENST00000478944 293 ntBASIC16.44■□□□□ 0.22
COL4A5P29400 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC16.44■□□□□ 0.22
COL4A5P29400 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC16.44■□□□□ 0.22
COL4A5P29400 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC16.44■□□□□ 0.22
COL4A5P29400 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC16.44■□□□□ 0.22
COL4A5P29400 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 AL078624.1-201ENST00000604004 547 ntBASIC16.44■□□□□ 0.22
COL4A5P29400 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
COL4A5P29400 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC16.44■□□□□ 0.22
COL4A5P29400 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms