Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 MIR611-201ENST00000384869 67 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 GPX3-202ENST00000517973 612 ntTSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 AC005746.3-201ENST00000614751 393 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 AC110057.1-201ENST00000636031 898 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 AC008620.2-201ENST00000510294 1569 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 AC011474.4-201ENST00000623523 2076 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 LINC02228-204ENST00000642115 2962 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.24□□□□□ -0.29
COL5A1P20908 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC13.24□□□□□ -0.29
COL5A1P20908 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC13.24□□□□□ -0.29
COL5A1P20908 PSME2P2-201ENST00000453033 700 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 CDK4P1-201ENST00000454213 828 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 IGKV1OR-2-201ENST00000457995 350 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC13.24□□□□□ -0.29
COL5A1P20908 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC13.24□□□□□ -0.29
COL5A1P20908 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 AL008638.4-201ENST00000624792 1315 ntBASIC13.24□□□□□ -0.29
COL5A1P20908 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.24□□□□□ -0.29
COL5A1P20908 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL5A1P20908 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL5A1P20908 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
COL5A1P20908 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 GH1-203ENST00000351388 685 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 AC098657.1-201ENST00000416270 1135 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 HNRNPA1P25-201ENST00000422644 937 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 MIR5091-201ENST00000578707 93 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms