Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 AC011498.7-201ENST00000624986 2027 ntBASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
NPIPA3F8WFD2 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
NPIPA3F8WFD2 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AP000356.3-201ENST00000382243 753 ntBASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AP000358.1-201ENST00000456260 156 ntBASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 RN7SL530P-201ENST00000485097 298 ntBASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 PHBP15-201ENST00000574228 665 ntBASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 MIR3677-201ENST00000578964 60 ntBASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AC051619.9-201ENST00000623237 597 ntBASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.02□□□□□ -0.33
NPIPA3F8WFD2 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 AC117489.1-201ENST00000625169 3217 ntBASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 BANF1P3-201ENST00000412556 261 ntBASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 DUX4L50-201ENST00000455245 715 ntBASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.01□□□□□ -0.33
NPIPA3F8WFD2 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms