Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 HLA-DMA-203ENST00000395305 777 ntBASIC13.77□□□□□ -0.21
COL28A1Q2UY09 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 TSPY25P-201ENST00000429463 745 ntBASIC13.77□□□□□ -0.21
COL28A1Q2UY09 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 DPY19L2P5-201ENST00000456300 331 ntBASIC13.77□□□□□ -0.21
COL28A1Q2UY09 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 AC009560.1-201ENST00000620208 434 ntBASIC13.77□□□□□ -0.21
COL28A1Q2UY09 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL28A1Q2UY09 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 INE2-201ENST00000630399 1874 ntBASIC13.76□□□□□ -0.21
COL28A1Q2UY09 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 HLA-DPA2-205ENST00000433582 733 ntBASIC13.76□□□□□ -0.21
COL28A1Q2UY09 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms