Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HMGA1P17096 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 KRT18P62-201ENST00000446618 1287 ntBASIC14.59□□□□□ -0.07
HMGA1P17096 AC093300.1-201ENST00000510368 1201 ntBASIC14.59□□□□□ -0.07
HMGA1P17096 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HMGA1P17096 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGA1P17096 MIR4472-1-201ENST00000584349 80 ntBASIC14.59□□□□□ -0.07
HMGA1P17096 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGA1P17096 AC011471.3-201ENST00000623576 402 ntBASIC14.59□□□□□ -0.07
HMGA1P17096 GARS-210ENST00000627489 324 ntTSL 4 BASIC14.59□□□□□ -0.07
HMGA1P17096 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGA1P17096 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 AL157996.1-201ENST00000624684 2299 ntBASIC14.59□□□□□ -0.07
HMGA1P17096 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 AC008620.2-201ENST00000510294 1569 ntBASIC14.59□□□□□ -0.07
HMGA1P17096 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGA1P17096 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGA1P17096 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGA1P17096 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGA1P17096 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
HMGA1P17096 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.58□□□□□ -0.07
HMGA1P17096 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGA1P17096 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.58□□□□□ -0.07
HMGA1P17096 MST1P2-201ENST00000457982 2291 ntBASIC14.58□□□□□ -0.08
HMGA1P17096 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HMGA1P17096 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HMGA1P17096 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
HMGA1P17096 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HMGA1P17096 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGA1P17096 GCSHP3-201ENST00000431120 391 ntBASIC14.58□□□□□ -0.08
HMGA1P17096 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGA1P17096 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGA1P17096 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGA1P17096 RN7SL556P-201ENST00000582856 298 ntBASIC14.58□□□□□ -0.08
HMGA1P17096 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGA1P17096 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGA1P17096 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGA1P17096 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HMGA1P17096 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
HMGA1P17096 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 AC007191.1-201ENST00000623179 2995 ntBASIC14.58□□□□□ -0.08
HMGA1P17096 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 DDC-204ENST00000426377 1700 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGA1P17096 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGA1P17096 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGA1P17096 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms