Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 AC097359.2-201ENST00000604992 2389 ntBASIC16.7■□□□□ 0.26
HLA-DOAP06340 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 AC019109.1-201ENST00000401725 1874 ntBASIC16.7■□□□□ 0.26
HLA-DOAP06340 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 HPX-213ENST00000615166 826 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 EML1-203ENST00000334192 4064 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 TBC1D27-202ENST00000424239 1573 ntBASIC16.69■□□□□ 0.26
HLA-DOAP06340 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 RNVU1-8-201ENST00000364272 125 ntBASIC16.69■□□□□ 0.26
HLA-DOAP06340 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 AC132825.4-202ENST00000578792 434 ntBASIC16.69■□□□□ 0.26
HLA-DOAP06340 AC138466.5-201ENST00000624002 808 ntBASIC16.69■□□□□ 0.26
HLA-DOAP06340 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 HLA-C-210ENST00000640219 976 ntBASIC16.69■□□□□ 0.26
HLA-DOAP06340 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DOAP06340 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HLA-DOAP06340 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms