Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 SALL4P5-201ENST00000419001 1760 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 GBP1P1-201ENST00000394662 1740 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
HOXA1P49639 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 SMG8-202ENST00000543872 3477 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 MUC20-205ENST00000447234 2589 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 DDX12P-201ENST00000432996 2947 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HOXA1P49639 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 AL139094.1-201ENST00000405549 1188 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 AC007969.1-201ENST00000433675 447 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 FTH1-202ENST00000526640 786 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC11.96□□□□□ -0.49
HOXA1P49639 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC11.96□□□□□ -0.49
HOXA1P49639 TPRX2P-201ENST00000535362 881 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXA1P49639 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC11.96□□□□□ -0.49
HOXA1P49639 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC11.96□□□□□ -0.49
HOXA1P49639 AL391069.4-201ENST00000609583 481 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 AC007431.3-201ENST00000623221 587 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 KHSRPP1-201ENST00000427983 1768 ntBASIC11.96□□□□□ -0.49
HOXA1P49639 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXA1P49639 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC11.96□□□□□ -0.5
HOXA1P49639 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 AL355388.2-201ENST00000610146 2157 ntTSL 4 BASIC11.96□□□□□ -0.5
HOXA1P49639 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
HOXA1P49639 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.96□□□□□ -0.5
HOXA1P49639 RAB27A-201ENST00000336787 3446 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC11.96□□□□□ -0.5
HOXA1P49639 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HOXA1P49639 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 AC012617.1-204ENST00000586340 2305 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 AC090505.1-201ENST00000430515 1834 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 CPA5-208ENST00000485477 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC11.95□□□□□ -0.5
HOXA1P49639 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms