RNA–Protein interactions for RNA: ENST00000543872.6

SMG8-202, Transcript of SMG8, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMG8, Length 3,477 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG8-202ENST00000543872 NISCHQ9Y2I1 1504 aa23.16■■□□□ 1.3
SMG8-202ENST00000543872 HRCP23327 699 aa21.43■■□□□ 1.02
SMG8-202ENST00000543872 PPARGC1BQ86YN6 1023 aaKnown RBP21.19■□□□□ 0.98
SMG8-202ENST00000543872 SUPT5HO00267 1087 aaKnown RBP21.16■□□□□ 0.98
SMG8-202ENST00000543872 PELP1Q8IZL8 1130 aaKnown RBP21.15■□□□□ 0.98
SMG8-202ENST00000543872 PCGF6Q9BYE7 350 aa21.13■□□□□ 0.97
SMG8-202ENST00000543872 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
SMG8-202ENST00000543872 MYO15BQ96JP2 1530 aa20.69■□□□□ 0.9
SMG8-202ENST00000543872 CHIC1Q5VXU3 224 aa20.64■□□□□ 0.89
SMG8-202ENST00000543872 MYT1Q01538 1121 aa20.47■□□□□ 0.87
SMG8-202ENST00000543872 SCAF1Q9H7N4 1312 aaKnown RBP20.4■□□□□ 0.86
SMG8-202ENST00000543872 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
SMG8-202ENST00000543872 TRIM26Q12899 539 aaPredicted RBP20.24■□□□□ 0.83
SMG8-202ENST00000543872 DCAF1Q9Y4B6 1507 aa20.14■□□□□ 0.81
SMG8-202ENST00000543872 ZEB1P37275 1124 aaPredicted RBP20.07■□□□□ 0.8
SMG8-202ENST00000543872 DCAF8L2P0C7V8 631 aa19.96■□□□□ 0.79
SMG8-202ENST00000543872 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
SMG8-202ENST00000543872 NEUROD1Q13562 356 aa19.84■□□□□ 0.77
SMG8-202ENST00000543872 ACIN1Q9UKV3 1341 aaKnown RBP19.84■□□□□ 0.77
SMG8-202ENST00000543872 GTF3C3Q9Y5Q9 886 aa19.79■□□□□ 0.76
SMG8-202ENST00000543872 EHMT2Q96KQ7 1210 aa19.72■□□□□ 0.75
SMG8-202ENST00000543872 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
SMG8-202ENST00000543872 FAM9AQ8IZU1 332 aaPredicted RBP19.65■□□□□ 0.74
SMG8-202ENST00000543872 CENPBP07199 599 aaPredicted RBP19.62■□□□□ 0.73
SMG8-202ENST00000543872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.55■□□□□ 0.72
SMG8-202ENST00000543872 DIEXFQ68CQ4 756 aaKnown RBP19.51■□□□□ 0.71
SMG8-202ENST00000543872 CCER1Q8TC90 406 aaPredicted RBP19.5■□□□□ 0.71
SMG8-202ENST00000543872 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
SMG8-202ENST00000543872 YTHDC1Q96MU7 727 aaKnown RBP19.4■□□□□ 0.7
SMG8-202ENST00000543872 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
SMG8-202ENST00000543872 BCL11AQ9H165 835 aa19.31■□□□□ 0.68
SMG8-202ENST00000543872 PRKCSHP14314 528 aaPredicted RBP19.07■□□□□ 0.64
SMG8-202ENST00000543872 ZNF316A6NFI3 1004 aaPredicted RBP19.05■□□□□ 0.64
SMG8-202ENST00000543872 MIER1Q8N108 512 aa19.01■□□□□ 0.63
SMG8-202ENST00000543872 RSF1Q96T23 1441 aaPredicted RBP18.81■□□□□ 0.6
SMG8-202ENST00000543872 ANP32EQ9BTT0 268 aa18.8■□□□□ 0.6
SMG8-202ENST00000543872 RB1CC1Q8TDY2 1594 aa18.72■□□□□ 0.59
SMG8-202ENST00000543872 SUPT16HQ9Y5B9 1047 aaKnown RBP18.72■□□□□ 0.59
SMG8-202ENST00000543872 CSRNP3Q8WYN3 585 aa18.7■□□□□ 0.58
SMG8-202ENST00000543872 HNRNPUL2Q1KMD3 747 aaKnown RBP18.68■□□□□ 0.58
SMG8-202ENST00000543872 ABCC9O60706 1549 aa18.67■□□□□ 0.58
SMG8-202ENST00000543872 TSHZ2Q9NRE2 1034 aa18.67■□□□□ 0.58
SMG8-202ENST00000543872 BCANQ96GW7 911 aa18.54■□□□□ 0.56
SMG8-202ENST00000543872 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
SMG8-202ENST00000543872 CEP162Q5TB80 1403 aa18.46■□□□□ 0.55
SMG8-202ENST00000543872 CLSPNQ9HAW4 1339 aa18.46■□□□□ 0.55
SMG8-202ENST00000543872 ERICH6Q7L0X2 663 aa18.45■□□□□ 0.54
SMG8-202ENST00000543872 SCRIBQ14160 1630 aa18.44■□□□□ 0.54
SMG8-202ENST00000543872 WRNQ14191 1432 aaPredicted RBP eCLIP18.41■□□□□ 0.54
SMG8-202ENST00000543872 FKBP8Q14318 412 aa18.32■□□□□ 0.52
SMG8-202ENST00000543872 KCNH8Q96L42 1107 aa18.29■□□□□ 0.52
SMG8-202ENST00000543872 CECR2Q9BXF3 1484 aa18.29■□□□□ 0.52
SMG8-202ENST00000543872 APLP2Q06481 763 aa18.28■□□□□ 0.52
SMG8-202ENST00000543872 RANGAP1P46060 587 aaPredicted RBP18.27■□□□□ 0.52
SMG8-202ENST00000543872 TNIKQ9UKE5 1360 aa18.26■□□□□ 0.51
SMG8-202ENST00000543872 RBM19Q9Y4C8 960 aaKnown RBP18.25■□□□□ 0.51
SMG8-202ENST00000543872 SOGA1O94964 1423 aa18.23■□□□□ 0.51
SMG8-202ENST00000543872 CCDC88BA6NC98 1476 aa18.22■□□□□ 0.51
SMG8-202ENST00000543872 ITGAEP38570 1179 aa18.22■□□□□ 0.51
SMG8-202ENST00000543872 MROH2BQ7Z745 1585 aa18.2■□□□□ 0.5
SMG8-202ENST00000543872 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
SMG8-202ENST00000543872 NEFLP07196 543 aa18.15■□□□□ 0.5
SMG8-202ENST00000543872 WIZO95785 1651 aa18.13■□□□□ 0.49
SMG8-202ENST00000543872 RUSC2Q8N2Y8 1516 aa18.11■□□□□ 0.49
SMG8-202ENST00000543872 ANO8Q9HCE9 1232 aaPredicted RBP18.09■□□□□ 0.49
SMG8-202ENST00000543872 MSH5O43196 834 aa18.07■□□□□ 0.48
SMG8-202ENST00000543872 TRIM52Q96A61 297 aa18.03■□□□□ 0.48
SMG8-202ENST00000543872 DHX57Q6P158 1386 aaKnown RBP18.02■□□□□ 0.47
SMG8-202ENST00000543872 DDX10Q13206 875 aaKnown RBP18.02■□□□□ 0.47
SMG8-202ENST00000543872 GOLGA3Q08378 1498 aa18■□□□□ 0.47
SMG8-202ENST00000543872 CLIP1P30622 1438 aa17.97■□□□□ 0.47
SMG8-202ENST00000543872 EEA1Q15075 1411 aa17.91■□□□□ 0.46
SMG8-202ENST00000543872 IRX6P78412 446 aaPredicted RBP17.9■□□□□ 0.46
SMG8-202ENST00000543872 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
SMG8-202ENST00000543872 HIRIP3Q9BW71 556 aaPredicted RBP17.89■□□□□ 0.45
SMG8-202ENST00000543872 VPS8Q8N3P4 1428 aa17.87■□□□□ 0.45
SMG8-202ENST00000543872 CDK11AQ9UQ88 783 aaPredicted RBP17.86■□□□□ 0.45
SMG8-202ENST00000543872 DEKP35659 375 aaKnown RBP17.85■□□□□ 0.45
SMG8-202ENST00000543872 BAZ1AQ9NRL2 1556 aaPredicted RBP17.84■□□□□ 0.45
SMG8-202ENST00000543872 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
SMG8-202ENST00000543872 CCDC136Q96JN2 1154 aa17.81■□□□□ 0.44
SMG8-202ENST00000543872 KANK4Q5T7N3 995 aaPredicted RBP17.8■□□□□ 0.44
SMG8-202ENST00000543872 FANCIQ9NVI1 1328 aa17.79■□□□□ 0.44
SMG8-202ENST00000543872 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
SMG8-202ENST00000543872 ANP32CO43423 234 aa17.77■□□□□ 0.44
SMG8-202ENST00000543872 NBR1Q14596 966 aa17.75■□□□□ 0.43
SMG8-202ENST00000543872 SIN3AQ96ST3 1273 aa17.73■□□□□ 0.43
SMG8-202ENST00000543872 HNRNPUQ00839 825 aaKnown RBP eCLIP17.68■□□□□ 0.42
SMG8-202ENST00000543872 PPP1R15AO75807 674 aaPredicted RBP17.68■□□□□ 0.42
SMG8-202ENST00000543872 NACADO15069 1562 aa17.67■□□□□ 0.42
SMG8-202ENST00000543872 MYT1LQ9UL68 1186 aa17.67■□□□□ 0.42
SMG8-202ENST00000543872 RAPGEF2Q9Y4G8 1499 aa17.67■□□□□ 0.42
SMG8-202ENST00000543872 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
SMG8-202ENST00000543872 SMARCA2P51531 1590 aa17.65■□□□□ 0.42
SMG8-202ENST00000543872 CCER2I3L3R5 266 aa17.65■□□□□ 0.42
SMG8-202ENST00000543872 KIF21BO75037 1637 aa17.64■□□□□ 0.41
SMG8-202ENST00000543872 UBE2Q2Q8WVN8 375 aa17.62■□□□□ 0.41
SMG8-202ENST00000543872 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.59■□□□□ 0.41
SMG8-202ENST00000543872 RAB3GAP2Q9H2M9 1393 aa17.59■□□□□ 0.41
SMG8-202ENST00000543872 B4GALNT3Q6L9W6 998 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms