Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC11.8□□□□□ -0.52
CDX1P47902 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC11.8□□□□□ -0.52
CDX1P47902 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC11.8□□□□□ -0.52
CDX1P47902 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC11.8□□□□□ -0.52
CDX1P47902 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 AC008687.7-202ENST00000637404 953 ntBASIC11.8□□□□□ -0.52
CDX1P47902 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
CDX1P47902 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 AC102953.2-201ENST00000609755 3026 ntBASIC11.8□□□□□ -0.52
CDX1P47902 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 AC018529.2-202ENST00000611482 3087 ntBASIC11.8□□□□□ -0.52
CDX1P47902 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC11.79□□□□□ -0.52
CDX1P47902 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CDX1P47902 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC11.79□□□□□ -0.52
CDX1P47902 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
CDX1P47902 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 RPF1-202ENST00000370656 724 ntTSL 2 BASIC11.79□□□□□ -0.52
CDX1P47902 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 APOC3-202ENST00000375345 604 ntTSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
CDX1P47902 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.79□□□□□ -0.52
CDX1P47902 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC11.79□□□□□ -0.52
CDX1P47902 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC11.79□□□□□ -0.52
CDX1P47902 MFF-223ENST00000524634 647 ntTSL 2 BASIC11.79□□□□□ -0.52
CDX1P47902 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11.79□□□□□ -0.52
CDX1P47902 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
CDX1P47902 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC11.79□□□□□ -0.52
CDX1P47902 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC11.79□□□□□ -0.52
CDX1P47902 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC11.79□□□□□ -0.52
CDX1P47902 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 ENPP7P14-201ENST00000621765 1040 ntBASIC11.79□□□□□ -0.52
CDX1P47902 AC006453.4-201ENST00000636949 1252 ntBASIC11.79□□□□□ -0.52
CDX1P47902 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC11.79□□□□□ -0.52
CDX1P47902 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CDX1P47902 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 AC016397.2-201ENST00000624848 1985 ntBASIC11.79□□□□□ -0.52
CDX1P47902 AHCYP2-201ENST00000430630 1300 ntBASIC11.79□□□□□ -0.52
CDX1P47902 AC107375.1-201ENST00000564464 2231 ntBASIC11.79□□□□□ -0.52
CDX1P47902 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CDX1P47902 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
CDX1P47902 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 NME1-209ENST00000511355 1645 ntTSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms