Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 REEP6-202ENST00000395479 739 ntAPPRIS ALT2 TSL 322.19■■□□□ 1.144e-6■□□□□ 8.3
YBX3P16989 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.134e-6■□□□□ 8.3
YBX3P16989 CYB5R1-205ENST00000482572 863 ntTSL 521.88■■□□□ 1.094e-6■□□□□ 8.3
YBX3P16989 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.85■■□□□ 1.094e-6■□□□□ 8.3
YBX3P16989 CYB5R1-203ENST00000473599 661 ntTSL 321.77■■□□□ 1.084e-6■□□□□ 8.3
YBX3P16989 TMEM41A-206ENST00000475480 1035 ntTSL 320.53■□□□□ 0.884e-6■□□□□ 8.3
YBX3P16989 CCM2-214ENST00000481194 5304 ntTSL 1 (best)20.39■□□□□ 0.854e-6■□□□□ 8.3
YBX3P16989 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.98■□□□□ 0.793e-9■□□□□ 8.3
YBX3P16989 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.774e-6■□□□□ 8.3
YBX3P16989 CTTN-213ENST00000529736 952 ntTSL 319.79■□□□□ 0.763e-9■□□□□ 8.3
YBX3P16989 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.664e-6■□□□□ 8.3
YBX3P16989 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC18.14■□□□□ 0.494e-6■□□□□ 8.3
YBX3P16989 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.494e-6■□□□□ 8.3
YBX3P16989 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.92■□□□□ 0.464e-6■□□□□ 8.3
YBX3P16989 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.384e-6■□□□□ 8.3
YBX3P16989 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.42■□□□□ 0.384e-6■□□□□ 8.3
YBX3P16989 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.374e-6■□□□□ 8.3
YBX3P16989 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.31■□□□□ 0.364e-6■□□□□ 8.3
YBX3P16989 SERBP1-207ENST00000490406 624 ntTSL 517.2■□□□□ 0.343e-9■□□□□ 8.3
YBX3P16989 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.33e-9■□□□□ 8.3
YBX3P16989 CYB561A3-206ENST00000536452 1827 ntTSL 216.54■□□□□ 0.244e-6■□□□□ 8.3
YBX3P16989 PPAN-203ENST00000430370 594 ntTSL 316.46■□□□□ 0.234e-6■□□□□ 8.3
YBX3P16989 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.194e-6■□□□□ 8.3
YBX3P16989 PAQR3-202ENST00000395594 3995 ntTSL 1 (best)16.22■□□□□ 0.193e-9■□□□□ 8.3
YBX3P16989 PAQR3-206ENST00000508599 549 ntTSL 416.08■□□□□ 0.163e-9■□□□□ 8.3
YBX3P16989 NAA50-203ENST00000477813 1945 ntTSL 5 BASIC15.92■□□□□ 0.144e-6■□□□□ 8.3
YBX3P16989 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.14e-6■□□□□ 8.3
YBX3P16989 REEP6-203ENST00000395484 611 ntTSL 515.62■□□□□ 0.094e-6■□□□□ 8.3
YBX3P16989 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.11■□□□□ 0.014e-6■□□□□ 8.3
YBX3P16989 CYB561A3-215ENST00000540317 1557 ntTSL 315.1■□□□□ 0.014e-6■□□□□ 8.3
YBX3P16989 RAD51-205ENST00000526763 625 ntTSL 314.91□□□□□ -0.024e-6■□□□□ 8.3
YBX3P16989 C11orf1-201ENST00000260276 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.034e-6■□□□□ 8.3
YBX3P16989 VPS26B-203ENST00000525918 621 ntTSL 214.8□□□□□ -0.044e-6■□□□□ 8.3
YBX3P16989 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.124e-6■□□□□ 8.3
YBX3P16989 KMT2D-204ENST00000549743 615 ntTSL 314.27□□□□□ -0.134e-6■□□□□ 8.3
YBX3P16989 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.164e-6■□□□□ 8.3
YBX3P16989 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.213e-9■□□□□ 8.3
YBX3P16989 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.253e-9■□□□□ 8.3
YBX3P16989 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.284e-6■□□□□ 8.3
YBX3P16989 INTS3-207ENST00000481797 5741 ntTSL 212.91□□□□□ -0.344e-6■□□□□ 8.3
YBX3P16989 LSS-203ENST00000419093 517 ntTSL 312.6□□□□□ -0.394e-6■□□□□ 8.3
YBX3P16989 WDR61-207ENST00000559332 844 ntTSL 312.56□□□□□ -0.44e-6■□□□□ 8.3
YBX3P16989 PAQR3-208ENST00000512299 597 ntTSL 412.17□□□□□ -0.463e-9■□□□□ 8.3
YBX3P16989 PAQR3-207ENST00000511594 2288 ntTSL 512.14□□□□□ -0.473e-9■□□□□ 8.3
YBX3P16989 CYB561A3-201ENST00000294072 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.474e-6■□□□□ 8.3
YBX3P16989 WDR61-203ENST00000558412 927 ntTSL 212.03□□□□□ -0.484e-6■□□□□ 8.3
YBX3P16989 WDR61-202ENST00000558311 1266 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.494e-6■□□□□ 8.3
YBX3P16989 NAA50-210ENST00000616174 3257 ntTSL 2 BASIC11.63□□□□□ -0.554e-6■□□□□ 8.3
YBX3P16989 VPS26B-204ENST00000527586 800 ntTSL 311.26□□□□□ -0.614e-6■□□□□ 8.3
YBX3P16989 CYB561A3-202ENST00000426130 3205 ntTSL 5 BASIC11.25□□□□□ -0.614e-6■□□□□ 8.3
YBX3P16989 INTS3-206ENST00000480659 866 ntTSL 411.07□□□□□ -0.644e-6■□□□□ 8.3
YBX3P16989 INTS3-201ENST00000318967 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.644e-6■□□□□ 8.3
YBX3P16989 COPS5-213ENST00000523890 1086 ntTSL 310.88□□□□□ -0.674e-6■□□□□ 8.3
YBX3P16989 INTS3-210ENST00000512605 3442 ntTSL 2 BASIC10.54□□□□□ -0.724e-6■□□□□ 8.3
YBX3P16989 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC9.86□□□□□ -0.834e-6■□□□□ 8.3
YBX3P16989 ABCF2-205ENST00000473874 648 ntTSL 39.58□□□□□ -0.884e-6■□□□□ 8.3
YBX3P16989 ARHGEF12-211ENST00000531616 3108 ntTSL 38.76□□□□□ -1.014e-6■□□□□ 8.3
YBX3P16989 RAD51-206ENST00000527860 566 ntTSL 48.57□□□□□ -1.044e-6■□□□□ 8.3
YBX3P16989 NAA50-206ENST00000493454 964 ntTSL 2 BASIC8.44□□□□□ -1.064e-6■□□□□ 8.3
YBX3P16989 NCKAP1-208ENST00000495619 665 ntTSL 38.29□□□□□ -1.084e-6■□□□□ 8.3
YBX3P16989 VPS26B-205ENST00000530402 740 ntTSL 38.18□□□□□ -1.14e-6■□□□□ 8.3
YBX3P16989 WDR61-214ENST00000560807 789 ntTSL 37.88□□□□□ -1.154e-6■□□□□ 8.3
YBX3P16989 WDR61-204ENST00000558453 463 ntTSL 57.82□□□□□ -1.164e-6■□□□□ 8.3
YBX3P16989 ASH2L-209ENST00000522675 345 ntTSL 57.78□□□□□ -1.164e-6■□□□□ 8.3
YBX3P16989 WDR61-210ENST00000559940 3629 nt7.48□□□□□ -1.214e-6■□□□□ 8.3
YBX3P16989 C11orf1-205ENST00000530799 509 ntTSL 37.47□□□□□ -1.214e-6■□□□□ 8.3
YBX3P16989 INTS3-205ENST00000476843 3404 ntTSL 1 (best)7.36□□□□□ -1.234e-6■□□□□ 8.3
YBX3P16989 PAQR3-212ENST00000515853 3370 ntTSL 1 (best)7.1□□□□□ -1.273e-9■□□□□ 8.3
YBX3P16989 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC6.99□□□□□ -1.294e-6■□□□□ 8.3
YBX3P16989 CYB5R1-202ENST00000446185 680 ntTSL 56.89□□□□□ -1.314e-6■□□□□ 8.3
YBX3P16989 GLRX2-203ENST00000472197 774 ntTSL 56.49□□□□□ -1.374e-6■□□□□ 8.3
YBX3P16989 MDM2-227ENST00000540709 502 ntTSL 36.29□□□□□ -1.44e-6■□□□□ 8.3
YBX3P16989 NAA50-211ENST00000630058 177 ntTSL 5 BASIC5.86□□□□□ -1.474e-6■□□□□ 8.3
YBX3P16989 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.77□□□□□ -1.494e-6■□□□□ 8.3
YBX3P16989 ASH2L-211ENST00000524263 726 ntTSL 33.55□□□□□ -1.844e-6■□□□□ 8.3
YBX3P16989 EEF2-202ENST00000594885 580 ntTSL 227.19■■□□□ 1.941e-67■□□□□ 8.3
YBX3P16989 MCM4-204ENST00000518382 366 ntTSL 35.59□□□□□ -1.513e-8■□□□□ 8.3
YBX3P16989 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.681e-6■□□□□ 8.3
YBX3P16989 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.541e-6■□□□□ 8.3
YBX3P16989 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.591e-6■□□□□ 8.3
YBX3P16989 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.631e-6■□□□□ 8.3
YBX3P16989 DTL-204ENST00000489149 815 ntTSL 25.72□□□□□ -1.496e-8■□□□□ 8.3
YBX3P16989 SETDB1-217ENST00000534805 2043 ntTSL 1 (best)13.49□□□□□ -0.257e-8■□□□□ 8.3
YBX3P16989 UBE2J2-207ENST00000435198 1056 ntTSL 335.82■■■■□ 3.322e-22■□□□□ 8.3
YBX3P16989 UBE2J2-210ENST00000464036 1256 ntTSL 330.66■■■□□ 2.52e-22■□□□□ 8.3
YBX3P16989 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.362e-22■□□□□ 8.3
YBX3P16989 UBE2J2-219ENST00000503294 814 ntTSL 429.32■■■□□ 2.282e-22■□□□□ 8.3
YBX3P16989 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.39■■■□□ 2.147e-12■□□□□ 8.3
YBX3P16989 GTF3C5-209ENST00000485692 827 ntTSL 228.3■■■□□ 2.127e-12■□□□□ 8.3
YBX3P16989 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.84■■■□□ 2.057e-12■□□□□ 8.3
YBX3P16989 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.992e-22■□□□□ 8.3
YBX3P16989 UBE2J2-214ENST00000473215 1028 ntTSL 327.32■■□□□ 1.962e-22■□□□□ 8.3
YBX3P16989 UBE2J2-211ENST00000466752 886 ntTSL 325.5■■□□□ 1.672e-22■□□□□ 8.3
YBX3P16989 UBE2J2-217ENST00000491779 611 ntTSL 225.5■■□□□ 1.672e-22■□□□□ 8.3
YBX3P16989 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.99■■□□□ 1.592e-22■□□□□ 8.3
YBX3P16989 UBE2J2-220ENST00000509720 472 ntTSL 324.55■■□□□ 1.522e-22■□□□□ 8.3
YBX3P16989 UBE2J2-208ENST00000450390 2455 ntTSL 524.11■■□□□ 1.452e-22■□□□□ 8.3
YBX3P16989 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC22.31■■□□□ 1.162e-22■□□□□ 8.3
YBX3P16989 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.37■■□□□ 1.012e-22■□□□□ 8.3
YBX3P16989 UBE2J2-215ENST00000477894 767 ntTSL 521.02■□□□□ 0.962e-22■□□□□ 8.3
Retrieved 100 of 29,075 protein–RNA pairs in 579 ms