RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 NISCHQ9Y2I1 1504 aa37.94■■■■□ 3.66
CCM2-214ENST00000481194 DCAF8L2P0C7V8 631 aa34.88■■■■□ 3.17
CCM2-214ENST00000481194 SHROOM4Q9ULL8 1493 aa33.13■■■□□ 2.89
CCM2-214ENST00000481194 SUPT5HO00267 1087 aaKnown RBP32.79■■■□□ 2.84
CCM2-214ENST00000481194 CCDC180Q9P1Z9 1646 aa32.46■■■□□ 2.79
CCM2-214ENST00000481194 ABCC9O60706 1549 aa32.04■■■□□ 2.72
CCM2-214ENST00000481194 ZCCHC6Q5VYS8 1495 aaKnown RBP31.63■■■□□ 2.65
CCM2-214ENST00000481194 RB1CC1Q8TDY2 1594 aa30.98■■■□□ 2.55
CCM2-214ENST00000481194 NACADO15069 1562 aa30.94■■■□□ 2.54
CCM2-214ENST00000481194 DCAF1Q9Y4B6 1507 aa30.88■■■□□ 2.53
CCM2-214ENST00000481194 TRIM41Q8WV44 630 aa30.86■■■□□ 2.53
CCM2-214ENST00000481194 PABPN1Q86U42 306 aaKnown RBP eCLIP30.86■■■□□ 2.53
CCM2-214ENST00000481194 SCRIBQ14160 1630 aa30.85■■■□□ 2.53
CCM2-214ENST00000481194 FAM9AQ8IZU1 332 aaPredicted RBP30.55■■■□□ 2.48
CCM2-214ENST00000481194 EHMT2Q96KQ7 1210 aa30.53■■■□□ 2.48
CCM2-214ENST00000481194 APLP2Q06481 763 aa30.45■■■□□ 2.47
CCM2-214ENST00000481194 MYO15BQ96JP2 1530 aa30.36■■■□□ 2.45
CCM2-214ENST00000481194 CHIC1Q5VXU3 224 aa30.12■■■□□ 2.41
CCM2-214ENST00000481194 UBTFP17480 764 aaKnown RBP30.06■■■□□ 2.4
CCM2-214ENST00000481194 BAZ1AQ9NRL2 1556 aaPredicted RBP29.75■■■□□ 2.35
CCM2-214ENST00000481194 RANGAP1P46060 587 aaPredicted RBP29.73■■■□□ 2.35
CCM2-214ENST00000481194 RSF1Q96T23 1441 aaPredicted RBP29.72■■■□□ 2.35
CCM2-214ENST00000481194 ATP1B4Q9UN42 357 aaPredicted RBP29.52■■■□□ 2.32
CCM2-214ENST00000481194 BAZ1BQ9UIG0 1483 aaKnown RBP29.49■■■□□ 2.31
CCM2-214ENST00000481194 TTBK1Q5TCY1 1321 aaPredicted RBP29.39■■■□□ 2.29
CCM2-214ENST00000481194 CECR2Q9BXF3 1484 aa29.35■■■□□ 2.29
CCM2-214ENST00000481194 PCGF6Q9BYE7 350 aa29.35■■■□□ 2.29
CCM2-214ENST00000481194 LOC105371045A0A1W2PR82 267 aa29.29■■■□□ 2.28
CCM2-214ENST00000481194 SMARCA2P51531 1590 aa29.26■■■□□ 2.27
CCM2-214ENST00000481194 MROH2BQ7Z745 1585 aa29.16■■■□□ 2.26
CCM2-214ENST00000481194 ZEB1P37275 1124 aaPredicted RBP29.14■■■□□ 2.25
CCM2-214ENST00000481194 CSRNP3Q8WYN3 585 aa29.11■■■□□ 2.25
CCM2-214ENST00000481194 TRIM26Q12899 539 aaPredicted RBP29.07■■■□□ 2.24
CCM2-214ENST00000481194 TOP2AP11388 1531 aaKnown RBP28.97■■■□□ 2.23
CCM2-214ENST00000481194 SMARCA4P51532 1647 aa28.96■■■□□ 2.23
CCM2-214ENST00000481194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.91■■■□□ 2.22
CCM2-214ENST00000481194 HNRNPUL2Q1KMD3 747 aaKnown RBP28.91■■■□□ 2.22
CCM2-214ENST00000481194 CCER1Q8TC90 406 aaPredicted RBP28.9■■■□□ 2.22
CCM2-214ENST00000481194 EEA1Q15075 1411 aa28.89■■■□□ 2.22
CCM2-214ENST00000481194 WRNQ14191 1432 aaPredicted RBP eCLIP28.87■■■□□ 2.21
CCM2-214ENST00000481194 WIZO95785 1651 aa28.8■■■□□ 2.2
CCM2-214ENST00000481194 CCDC88BA6NC98 1476 aa28.78■■■□□ 2.2
CCM2-214ENST00000481194 PPARGC1BQ86YN6 1023 aaKnown RBP28.78■■■□□ 2.2
CCM2-214ENST00000481194 ATAD2BQ9ULI0 1458 aa28.77■■■□□ 2.2
CCM2-214ENST00000481194 FBLN2P98095 1184 aa28.71■■■□□ 2.19
CCM2-214ENST00000481194 KIF27Q86VH2 1401 aa28.56■■■□□ 2.16
CCM2-214ENST00000481194 ERCC6Q03468 1493 aa28.55■■■□□ 2.16
CCM2-214ENST00000481194 PDS5BQ9NTI5 1447 aa28.52■■■□□ 2.16
CCM2-214ENST00000481194 GOLGA3Q08378 1498 aa28.48■■■□□ 2.15
CCM2-214ENST00000481194 EIF4G1Q04637 1599 aaKnown RBP28.46■■■□□ 2.15
CCM2-214ENST00000481194 ITGAEP38570 1179 aa28.43■■■□□ 2.14
CCM2-214ENST00000481194 CADPSQ9ULU8 1353 aa28.42■■■□□ 2.14
CCM2-214ENST00000481194 NCAPD3P42695 1498 aa28.42■■■□□ 2.14
CCM2-214ENST00000481194 CEP164Q9UPV0 1460 aa28.38■■■□□ 2.13
CCM2-214ENST00000481194 MYT1LQ9UL68 1186 aa28.35■■■□□ 2.13
CCM2-214ENST00000481194 CDK11AQ9UQ88 783 aaPredicted RBP28.33■■■□□ 2.12
CCM2-214ENST00000481194 FAM50AQ14320 339 aaKnown RBP28.3■■■□□ 2.12
CCM2-214ENST00000481194 P3H3Q8IVL6 736 aa28.29■■■□□ 2.12
CCM2-214ENST00000481194 CHMP7Q8WUX9 453 aaPredicted RBP28.29■■■□□ 2.12
CCM2-214ENST00000481194 BICRAQ9NZM4 1560 aa28.27■■■□□ 2.12
CCM2-214ENST00000481194 CLIP1P30622 1438 aa28.24■■■□□ 2.11
CCM2-214ENST00000481194 TNIKQ9UKE5 1360 aa28.21■■■□□ 2.11
CCM2-214ENST00000481194 ABCC8Q09428 1581 aa28.19■■■□□ 2.1
CCM2-214ENST00000481194 HMGXB3Q12766 1538 aa28.19■■■□□ 2.1
CCM2-214ENST00000481194 CUX2O14529 1486 aa28.17■■■□□ 2.1
CCM2-214ENST00000481194 CEP162Q5TB80 1403 aa28.1■■■□□ 2.09
CCM2-214ENST00000481194 HRCP23327 699 aa28.09■■■□□ 2.09
CCM2-214ENST00000481194 UNC13AQ9UPW8 1703 aa28.05■■■□□ 2.08
CCM2-214ENST00000481194 FANCD2Q9BXW9 1451 aa28.05■■■□□ 2.08
CCM2-214ENST00000481194 SOGA1O94964 1423 aa28.04■■■□□ 2.08
CCM2-214ENST00000481194 CC2D2AQ9P2K1 1620 aa28.02■■■□□ 2.08
CCM2-214ENST00000481194 CARMIL1Q5VZK9 1371 aa28.02■■■□□ 2.08
CCM2-214ENST00000481194 NPM1P06748 294 aaKnown RBP eCLIP27.93■■■□□ 2.06
CCM2-214ENST00000481194 TRIM52Q96A61 297 aa27.89■■■□□ 2.06
CCM2-214ENST00000481194 ARID3CA6NKF2 412 aa27.88■■■□□ 2.05
CCM2-214ENST00000481194 MTUS2Q5JR59 1369 aa27.84■■■□□ 2.05
CCM2-214ENST00000481194 PEG3Q9GZU2 1588 aa27.84■■■□□ 2.05
CCM2-214ENST00000481194 CFTRP13569 1480 aa27.83■■■□□ 2.04
CCM2-214ENST00000481194 FHAD1B1AJZ9 1412 aa27.8■■■□□ 2.04
CCM2-214ENST00000481194 PELP1Q8IZL8 1130 aaKnown RBP27.77■■■□□ 2.04
CCM2-214ENST00000481194 CENPBP07199 599 aaPredicted RBP27.72■■■□□ 2.03
CCM2-214ENST00000481194 ZNF777Q9ULD5 760 aaPredicted RBP27.71■■■□□ 2.03
CCM2-214ENST00000481194 RAPGEF2Q9Y4G8 1499 aa27.71■■■□□ 2.03
CCM2-214ENST00000481194 TDRD9Q8NDG6 1382 aaKnown RBP27.7■■■□□ 2.02
CCM2-214ENST00000481194 FGD5Q6ZNL6 1462 aa27.64■■■□□ 2.02
CCM2-214ENST00000481194 PLEKHD1A6NEE1 506 aa27.6■■■□□ 2.01
CCM2-214ENST00000481194 ACIN1Q9UKV3 1341 aaKnown RBP27.59■■■□□ 2.01
CCM2-214ENST00000481194 CARMIL2Q6F5E8 1435 aa27.58■■■□□ 2.01
CCM2-214ENST00000481194 VPS8Q8N3P4 1428 aa27.54■■■□□ 2
CCM2-214ENST00000481194 LAMC3Q9Y6N6 1575 aa27.52■■■□□ 2
CCM2-214ENST00000481194 MRC2Q9UBG0 1479 aa27.5■■□□□ 1.99
CCM2-214ENST00000481194 FMN1Q68DA7 1419 aa27.49■■□□□ 1.99
CCM2-214ENST00000481194 NEUROD1Q13562 356 aa27.48■■□□□ 1.99
CCM2-214ENST00000481194 GAPVD1Q14C86 1478 aa27.45■■□□□ 1.99
CCM2-214ENST00000481194 TOP2BQ02880 1626 aa27.45■■□□□ 1.98
CCM2-214ENST00000481194 TSPY4P0CV99 314 aa27.45■■□□□ 1.98
CCM2-214ENST00000481194 TSPY10P0CW01 314 aa27.45■■□□□ 1.98
CCM2-214ENST00000481194 SYNJ1O43426 1573 aa27.39■■□□□ 1.97
CCM2-214ENST00000481194 NESP48681 1621 aa27.38■■□□□ 1.97
CCM2-214ENST00000481194 DNMBPQ6XZF7 1577 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms